Applications: Difference between revisions
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Several image processing pipelines have already been developed in MiToBo. <br/> | Several image processing pipelines have already been developed in MiToBo. <br/> | ||
Below you can find selected example applications, some of them have been published already. | Below you can find selected example applications, some of them have been published already. | ||
* [[Applications/PaCeQuant | PaCeQuant]] (released with MiToBo 1.8.6), <br/> for quantifying pavement cell shape in a high-throughput manner | |||
* [[Applications/MTBCellCounter | MTB Cell Counter]] (since MiToBo 1.5), <br/> a tool for semi-automatic labeling and counting of spot-like structures like, e.g., plastides, stress granules or p-bodies | |||
* [[Applications/MiCa | MiCA - MiToBo Cell Image Analyzer]]<br/> for segmenting cell boundaries and sub-cellular particles in fluorescent microscopy images | * [[Applications/MiCa | MiCA - MiToBo Cell Image Analyzer]]<br/> for segmenting cell boundaries and sub-cellular particles in fluorescent microscopy images | ||
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* [[Applications/NeuronAnalyzer2D | Neuron Analyzer 2D]]<br/> for segmenting the area of neurites and quantify protein concentrations within these neurites | * [[Applications/NeuronAnalyzer2D | Neuron Analyzer 2D]]<br/> for segmenting the area of neurites and quantify protein concentrations within these neurites | ||
* [[Applications/ScratchAssayAnalyzer | Scratch Assay Analyzer]]<br/> for | * [[Applications/ScratchAssayAnalyzer | Scratch Assay Analyzer]]<br/> for analysis of collective cell migration based on scratch/ wound closure assay images | ||
* [[Applications/CellMigrationAnalyzer | Cell Migration Analyzer]]<br/> for migration analysis based on cell tracking | * [[Applications/CellMigrationAnalyzer | Cell Migration Analyzer]]<br/> for migration analysis based on single cell tracking | ||
* [[Applications/ActinAnalyzer2D | Actin Analyzer 2D]] (since MiToBo 1.4) <br/> for quantifying and comparing actin microfilament structures | * [[Applications/ActinAnalyzer2D | Actin Analyzer 2D]] (since MiToBo 1.4) <br/> for quantifying and comparing actin microfilament structures | ||
Revision as of 08:37, 22 September 2017
Several image processing pipelines have already been developed in MiToBo.
Below you can find selected example applications, some of them have been published already.
- PaCeQuant (released with MiToBo 1.8.6),
for quantifying pavement cell shape in a high-throughput manner
- MTB Cell Counter (since MiToBo 1.5),
a tool for semi-automatic labeling and counting of spot-like structures like, e.g., plastides, stress granules or p-bodies
- MiCA - MiToBo Cell Image Analyzer
for segmenting cell boundaries and sub-cellular particles in fluorescent microscopy images
- Neuron Analyzer 2D
for segmenting the area of neurites and quantify protein concentrations within these neurites
- Scratch Assay Analyzer
for analysis of collective cell migration based on scratch/ wound closure assay images
- Cell Migration Analyzer
for migration analysis based on single cell tracking
- Actin Analyzer 2D (since MiToBo 1.4)
for quantifying and comparing actin microfilament structures
