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= MiToBo - A <span style="color:#CC0000">m</span>icroscope <span style="color:#CC0000">i</span>mage analysis <span style="color:#CC0000">to</span>ol<span style="color:#CC0000">bo</span>x = | |||
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'''What is MiToBo?'''<br> | |||
The Microscope Image Analysis Toolbox MiToBo is an extension for the widely used image processing application [http://rsbweb.nih.gov/ij/ ImageJ] and its new release [http://developer.imagej.net/ ImageJ 2.0].<br /> | The Microscope Image Analysis Toolbox MiToBo is an extension for the widely used image processing application [http://rsbweb.nih.gov/ij/ ImageJ] and its new release [http://developer.imagej.net/ ImageJ 2.0].<br /> | ||
MiToBo ships with a set of operators ready to be used as plugins in ImageJ. They focus on the analysis of biomedical images acquired by various | MiToBo ships with a set of operators ready to be used as plugins in ImageJ. They focus on the analysis of biomedical images acquired by various | ||
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Furthermore, MiToBo offers a user- and programmer friendly framework for developing algorithms that have properties not available in ImageJ, <br /> | Furthermore, MiToBo offers a user- and programmer friendly framework for developing algorithms that have properties not available in ImageJ, <br /> | ||
however, still provides full compatibility to all ImageJ features. <br /> | however, still provides full compatibility to all ImageJ features. <br /> | ||
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MiToBo completely separates the implementation of image processing algorithms from potential user interfaces.<br /> | MiToBo completely separates the implementation of image processing algorithms from potential user interfaces.<br /> | ||
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MiToBo takes full advantage of Alida's features, hence, provides a framework for implementing image analysis algorithms allowing for automatic documentation and automatic user interface generation, and includes the graphical programming editor Grappa for user-friendly design of more complex processing pipelines. | MiToBo takes full advantage of Alida's features, hence, provides a framework for implementing image analysis algorithms allowing for automatic documentation and automatic user interface generation, and includes the graphical programming editor Grappa for user-friendly design of more complex processing pipelines. | ||
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'''Visit MiToBo also at...'''<br> | |||
{| | |||
|style="text-align:center;width:10%"|[[file:Imagej-128.png|90px|link=http://imagej.net/MiToBo]] | |||
|style="text-align:center;width:10%"|[[file:logo.png|90px|link=http://imagejdocu.tudor.lu/doku.php?id=plugin:collections:mitobo_-_a_microscope_image_analysis_toolbox:start]] | |||
|style="text-align:center;width:10%"|[[file:logo-blue.png|90px|link=https://omictools.com/microscope-image-analysis-toolbox-tool]] | |||
|style="text-align:center;width:10%"|[[file:Git.png|90px|link=https://github.com/mitobo-hub]] | |||
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|style="text-align:center;width:10%"|[http://imagej.net/MiToBo ImageJ.net] | |||
|style="text-align:center;width:10%"|[http://imagejdocu.tudor.lu/doku.php?id=plugin:collections:mitobo_-_a_microscope_image_analysis_toolbox:start ImageJ Docu Wiki] | |||
|style="text-align:center;width:10%"|[https://omictools.com/microscope-image-analysis-toolbox-tool OMIC Tools] | |||
|style="text-align:center;width:10%"|[https://github.com/mitobo-hub GitHub] | |||
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'''How to get MiToBo?'''<br> | |||
* ImageJ-Users:<br> download the [https://moon.informatik.uni-halle.de/archiva/repository/releases/de/unihalle/informatik/MiToBo/mitobo-plugins/1.8.7.1/mitobo-plugins-1.8.7.1-bin.zip MiToBo-Plugins package] and follow the installation instructions to be found [[Installation | here]]. | |||
* Fiji-Users:<br> simply add MiToBo's update site [http://sites.imagej.net/MiToBo http://sites.imagej.net/MiToBo] to your Fiji installation | |||
* use in general:<br> you can download MiToBo and the MiToBo plugins package [[Downloads | here]]. <br/> | |||
You can find the API documentation for this release [http://www.informatik.uni-halle.de/mitobo/api/index.html here].<br/> | |||
Furthermore MiToBo offers you a user and programmer guide<br> which you can download [http://www.informatik.uni-halle.de/mitobo/downloads/manual/MiToBoManual.pdf here]. | |||
You can find the API documentation for this release [http://www.informatik.uni-halle.de/mitobo/api/index.html here].<br/> | </div> | ||
Furthermore MiToBo offers you a user and programmer guide which you can download [http://www.informatik.uni-halle.de/mitobo/downloads/manual/MiToBoManual.pdf here]. | </div> | ||
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== | '''Latest News'''<br> | ||
* 07/2018: We have added a new page [[Tips_and_Tricks| Tips and Tricks]] here in the Wiki where you can find information on how to accomplish common tasks like manually labeling images. | |||
* 05/2018: MiToBo 1.8.10 and MiToBo-Plugins 1.8.10 have been released shipping with new operators for biofilm analysis. | |||
* 05/2018: MiToBo 1.8.9 and MiToBo-Plugins 1.8.9 have been released mainly featuring an update of our MTBCellCounter tool. | |||
* 01/2018: MiToBo 1.8.7 and MiToBo-Plugins 1.8.7.1 have been released mainly featuring improved support for commandline data I/O of operators.<br>Note that from now on MiToBo releases are PGP signed. MiToBo's [https://pgp.mit.edu/pks/lookup?op=get&search=0x259F7DD171EFF7A9 public key] for verification can be found on public key servers, e.g., at https://pgp.mit.edu/. | |||
* 09/2017: MiToBo and MiToBo-Plugins 1.8.6 have been released! The new release includes [[Applications/PaCeQuant | PaCeQuant ]], our new tool for high-throughput quantification of pavement cell shape. | |||
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The news archive can be found [[News Archive | here]]. | The news archive can be found [[News Archive | here]]. | ||
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== Licensing information | </div> | ||
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'''Licensing information'''<br> | |||
MiToBo is free software: you can redistribute it and/or modify under the terms of the [http://www.gnu.org/licenses/gpl-3.0.html GNU General Public License version 3] or (at your option) any later version as published by the [http://www.fsf.org/ Free Software Foundation]. | MiToBo is free software: you can redistribute it and/or modify under the terms of the [http://www.gnu.org/licenses/gpl-3.0.html GNU General Public License version 3] or (at your option) any later version as published by the [http://www.fsf.org/ Free Software Foundation]. | ||
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== Bug reports & Feature requests | </div> | ||
Bug reports and feature requests can be submitted | <br> | ||
Before reporting a new bug, please check if that bug has already been submitted | <div style="margin: 0; margin-right:10px; border: 2px solid #dfdfdf; background-color:#f8f8ff;"> | ||
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'''Gnu PGP Public Key'''<br> | |||
Since version 1.8.7 MiToBo and MiToBo-Plugins releases are PGP signed. MiToBo's [https://pgp.mit.edu/pks/lookup?op=get&search=0x259F7DD171EFF7A9 public key] for verification can be found on public key servers, e.g., at https://pgp.mit.edu/. | |||
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'''Bug reports & Feature requests'''<br> | |||
Bug reports and feature requests can be submitted as issues on [https://github.com/mitobo-hub/mitobo/issues Github] or by mail to [mailto:mitobo@informatik.uni-halle.de mitobo@informatik.uni-halle.de]. Before reporting a new bug or requesting a new feature, please check if that bug has already been submitted. | |||
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Revision as of 12:20, 25 July 2018
MiToBo - A microscope image analysis toolbox
What is MiToBo?
Furthermore, MiToBo offers a user- and programmer friendly framework for developing algorithms that have properties not available in ImageJ,
MiToBo completely separates the implementation of image processing algorithms from potential user interfaces.
MiToBo takes full advantage of Alida's features, hence, provides a framework for implementing image analysis algorithms allowing for automatic documentation and automatic user interface generation, and includes the graphical programming editor Grappa for user-friendly design of more complex processing pipelines.
Visit MiToBo also at...
|
How to get MiToBo?
You can find the API documentation for this release here.
Latest News
The news archive can be found here.
Licensing information
Gnu PGP Public Key
Bug reports & Feature requests |