Main Page: Difference between revisions
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'''Highlight operators and tools in MiToBo''' | '''Highlight operators and tools in MiToBo''' | ||
{|style="background-color:#f8f8ff" | {|style="background-color:#f8f8ff" | ||
|style="text-align:left;width:10%|[[File:MiToBo_logo_CytoskeletonAnalyzer2D.png|border| | |style="text-align:left;width:10%|[[File:MiToBo_logo_CytoskeletonAnalyzer2D.png|border|72px|left|link=http://mitobo.informatik.uni-halle.de/index.php/Applications/CytoskeletonAnalyzer2D]] | ||
|style="text-align:left;width:80%|'''''CytoskeletonAnalyzer2D''''' for the quantification of cytoskeleton structural patterns in microscopy images with texture measures | |style="text-align:left;width:80%|'''''[[Applications/CytoskeletonAnalyzer2D|CytoskeletonAnalyzer2D]]''''' for the quantification of cytoskeleton structural patterns in microscopy images with texture measures;<br> | ||
to ease cell boundary extraction in data preparation we additionally provide the '''''[[Applications/CellBoundaryExtractor2D|CellBoundaryExtractor2D]]''''' and a handy '''''[[Operators/Tools/Interactive/LabelImageEditor|LabelImageEditor]]''''' | |||
|- | |- | ||
|style="text-align:left;width:10%|[[File:MiToBo_logo_PaCeQuant.png|border| | |style="text-align:left;width:10%|[[File:MiToBo_logo_PaCeQuant.png|border|72px|left|link=http://mitobo.informatik.uni-halle.de/index.php/Applications/PaCeQuant]] | ||
|style="text-align:left;width:80%|'''''PaCeQuant''''' for quantifying the morphology and shape characteristics of cells | |style="text-align:left;width:80%|'''''[[Applications/PaCeQuant|PaCeQuant]]''''' for quantifying the morphology and shape characteristics of cells | ||
|- | |- | ||
|style="text-align:left;width:10%|[[File:NeuronAnalyzer2D.png|border| | |style="text-align:left;width:10%|[[File:NeuronAnalyzer2D.png|border|72px|left|link=http://mitobo.informatik.uni-halle.de/index.php/Applications/NeuronAnalyzer2D]] | ||
|style="text-align:left;width:80%|'''''Neuron Analyzer''''' for the segmentation of neurons in microscope images | |style="text-align:left;width:80%|'''''[[Applications/NeuronAnalyzer2D|Neuron Analyzer]]''''' for the segmentation of neurons in microscope images | ||
|- | |- | ||
|style="text-align:left;width:10%|[[File: | |style="text-align:left;width:10%|[[File:tracking_ES-2.gif|72px|left|link=http://mitobo.informatik.uni-halle.de/index.php/Applications/CellMigrationAnalyzer]] | ||
|style="text-align:left;width:80%|'''''Cell Migration Analyzer''''' for analyzing single cell migration from time lapse image sequences | |style="text-align:left;width:80%|'''''[[Applications/CellMigrationAnalyzer|Cell Migration Analyzer]]''''' for analyzing single cell migration from time lapse image sequences | ||
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|style="text-align:left;width:10%|[[File:GFP_U2OS_overlay.png| | |style="text-align:left;width:10%|[[File:GFP_U2OS_overlay.png|72px|left|border|link=http://mitobo.informatik.uni-halle.de/index.php/Applications/ScratchAssayAnalyzer]] | ||
|style="text-align:left;width:80%|'''''Scratch Assay Analyzer''''' for analyzing microscope images from collective cell migration experiments | |style="text-align:left;width:80%|'''''[[Applications/ScratchAssayAnalyzer|Scratch Assay Analyzer]]''''' for analyzing microscope images from collective cell migration experiments | ||
|} | |} | ||
For several other important operators and plugins documentation is available via the [[Operator_Documentation| Operator Documentation pages]] here in the Wiki.<br> | |||
The pages are structured according to the package structure of MiToBo which is also mirrored in the selection panel of MiToBo's operator runner. | |||
<br> | |||
'''MiToBo for developers'''<br> | '''MiToBo for developers'''<br> | ||
MiToBo aims not only to support users in analyzing their images, but also targets at developers by offering a programmer-friendly software framework and API for developing new algorithms. | MiToBo aims not only to support users in analyzing their images, but also targets at developers by offering a programmer-friendly software framework and API for developing new algorithms. | ||
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<div style="margin: 0; margin-right:10px; border: 2px solid #dfdfdf; background-color:#f8f8ff;"> | <div style="margin: 0; margin-right:10px; border: 2px solid #dfdfdf; background-color:#f8f8ff;"> | ||
<div style="padding: 0.3em 1em 0.7em 1em;"> | <div style="padding: 0.3em 1em 0.7em 1em;"> | ||
'''Visit MiToBo also at...'''<br> | '''Visit and follow MiToBo also at...'''<br> | ||
{| | {| | ||
|style="text-align:center;width:10%"|[[file:Imagej-128.png|90px|link=http://imagej.net/MiToBo]] | |style="text-align:center;width:10%"|[[file:Imagej-128.png|90px|link=http://imagej.net/MiToBo]] | ||
|style="text-align:center;width:10%"|[[file:Git.png|90px|link=https://github.com/mitobo-hub]] | |||
|style="text-align:center;width:10%"|[[file:mtbtw.png|320px|link=https://twitter.com/MiToBo_Hal]] | |||
|style="text-align:center;width:10%"|[[file:logo.png|90px|link=http://imagejdocu.tudor.lu/doku.php?id=plugin:collections:mitobo_-_a_microscope_image_analysis_toolbox:start]] | |style="text-align:center;width:10%"|[[file:logo.png|90px|link=http://imagejdocu.tudor.lu/doku.php?id=plugin:collections:mitobo_-_a_microscope_image_analysis_toolbox:start]] | ||
|style="text-align:center;width:10%"|[[file:logo-blue.png|90px|link=https://omictools.com/microscope-image-analysis-toolbox-tool]] | |style="text-align:center;width:10%"|[[file:logo-blue.png|90px|link=https://omictools.com/microscope-image-analysis-toolbox-tool]] | ||
|- | |- | ||
|style="text-align:center;width:10%"|[http://imagej.net/MiToBo ImageJ.net] | |style="text-align:center;width:10%"|[http://imagej.net/MiToBo ImageJ.net] | ||
|style="text-align:center;width:10%"|[https://github.com/mitobo-hub GitHub] | |||
|style="text-align:center;width:10%"|[https://twitter.com/MiToBo_Hal Twitter] | |||
|style="text-align:center;width:10%"|[http://imagejdocu.tudor.lu/doku.php?id=plugin:collections:mitobo_-_a_microscope_image_analysis_toolbox:start ImageJ Docu Wiki] | |style="text-align:center;width:10%"|[http://imagejdocu.tudor.lu/doku.php?id=plugin:collections:mitobo_-_a_microscope_image_analysis_toolbox:start ImageJ Docu Wiki] | ||
|style="text-align:center;width:10%"|[https://omictools.com/microscope-image-analysis-toolbox-tool OMIC Tools] | |style="text-align:center;width:10%"|[https://omictools.com/microscope-image-analysis-toolbox-tool OMIC Tools] | ||
|} | |} | ||
</div> | </div> | ||
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<div style="padding: 0.3em 1em 0.7em 1em;"> | <div style="padding: 0.3em 1em 0.7em 1em;"> | ||
'''Latest News'''<br> | '''Latest News'''<br> | ||
* 07/2019: MiToBo 1.8.15 has been released fixing several issues with handling images in MiToBo. | |||
* 02/2019: MiToBo 1.8.14 has been released. | |||
* 12/2018: MiToBo 1.8.13 has been released including the CytoskeletonAnalyzer2D. | * 12/2018: MiToBo 1.8.13 has been released including the CytoskeletonAnalyzer2D. | ||
* 07/2018: We have added a new page [[Tips_and_Tricks| Tips and Tricks]] here in the Wiki where you can find information on how to accomplish common tasks like manually labeling images. | * 07/2018: We have added a new page [[Tips_and_Tricks| Tips and Tricks]] here in the Wiki where you can find information on how to accomplish common tasks like manually labeling images. | ||
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You can find the API documentation for the current release [http://www.informatik.uni-halle.de/mitobo/api/index.html here].<br/> | You can find the API documentation for the current release [http://www.informatik.uni-halle.de/mitobo/api/index.html here].<br/> | ||
Furthermore MiToBo offers you a user and programmer guide | Furthermore MiToBo offers you a user and programmer guide which you can download [http://www.informatik.uni-halle.de/mitobo/downloads/manual/MiToBoManual.pdf here]. | ||
</div> | </div> | ||
</div> | </div> | ||
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{|style="background-color:#f8f8ff" | {|style="background-color:#f8f8ff" | ||
|style="text-align:left;width:20%|[[File:forum-image-sc.png|border|64px|left|link=https://forum.image.sc/]] | |style="text-align:left;width:20%|[[File:forum-image-sc.png|border|64px|left|link=https://forum.image.sc/]] | ||
|style="text-align:left;width:60%|To get help on your questions about MiToBo tools, plugins and operators you can use the forum at [https://forum.image.sc/ image.sc] | |style="text-align:left;width:60%|To get help on your questions about MiToBo tools, plugins and operators you can use the forum at [https://forum.image.sc/ image.sc] tagging your post with [https://forum.image.sc/tags/mitobo #mitobo]. | ||
|- | |- | ||
|style="text-align:left;width:20%|[[file:Git.png|64px|link=https://github.com/mitobo-hub]] | |style="text-align:left;width:20%|[[file:Git.png|64px|link=https://github.com/mitobo-hub]] |
Revision as of 12:26, 13 September 2019
MiToBo - A microscope image analysis toolbox
What is MiToBo? Highlight operators and tools in MiToBo
For several other important operators and plugins documentation is available via the Operator Documentation pages here in the Wiki.
MiToBo takes full advantage of Alida's features, hence, provides a framework for implementing image analysis algorithms allowing for automatic documentation and automatic user interface generation, and includes the graphical programming editor Grappa for user-friendly design of more complex processing pipelines.
Visit and follow MiToBo also at...
|
Latest News
The news archive can be found here.
How to get MiToBo?
You can find the API documentation for the current release here.
Support, Bug reports & Feature requests
Before reporting a new bug or requesting a new feature, please check if that bug has already been submitted in the forum or on Github.
Licensing information
Gnu PGP Public Key |