Applications/NeuronAnalyzer2D - Revision history

Misiak: /* Neuron Analyzer 2D */

2015-06-23T07:06:05Z

Neuron Analyzer 2D

← Older revision		Revision as of 09:06, 23 June 2015
Line 31:		Line 31:

	To save these variables permanently, copy the commands above to your local .bashrc file.		To save these variables permanently, copy the commands above to your local .bashrc file.

			Finally the Bioconductor package [http://www.bioconductor.org/packages/release/bioc/html/xcms.html xcms] must be installed.<br/>

	'''Note:''' The application is currently only available on Linux OS.<br/>		'''Note:''' The application is currently only available on Linux OS.<br/>

2014-06-25T09:20:52Z

Neuron Analyzer 2D

← Older revision		Revision as of 11:20, 25 June 2014
Line 33:		Line 33:

	'''Note:''' The application is currently only available on Linux OS.<br/>		'''Note:''' The application is currently only available on Linux OS.<br/>
	Current version of ''Neuron Analyzer 2D'' was tested with R version 3.1.0 (2014-04-10) with rJava_0.9-6.		Current version of ''Neuron Analyzer 2D'' was tested with R version 3.1.0 (2014-04-10) with rJava_0.9-6 (2013-12-23).

	'''Example images'''<br/>		'''Example images'''<br/>

2014-06-25T09:14:38Z

Neuron Analyzer 2D

← Older revision		Revision as of 11:14, 25 June 2014
Line 33:		Line 33:

	'''Note:''' The application is currently only available on Linux OS.<br/>		'''Note:''' The application is currently only available on Linux OS.<br/>
	Current version of ''Neuron Analyzer 2D'' ~~uses~~ R version 3.0.2 (~~2013~~-09-25) with rJava_0.9-6.		Current version of ''Neuron Analyzer 2D'' was tested with R version 3.1.0 (2014-04-10) with rJava_0.9-6.

	'''Example images'''<br/>		'''Example images'''<br/>

2014-06-25T09:13:16Z

Neuron Analyzer 2D

← Older revision		Revision as of 11:13, 25 June 2014
Line 33:		Line 33:

	'''Note:''' The application is currently only available on Linux OS.<br/>		'''Note:''' The application is currently only available on Linux OS.<br/>
	Current version of ''Neuron Analyzer 2D'' uses R version 3.0.2 (2013-09-25) with rJava_0.9-~~5 (jri_0~~.~~5-5)~~		Current version of ''Neuron Analyzer 2D'' uses R version 3.0.2 (2013-09-25) with rJava_0.9-6.

	'''Example images'''<br/>		'''Example images'''<br/>
Line 42:		Line 42:

	----<br>		----<br>

			'''June 2014''' (since MiToBo version [[Downloads \| 1.4]])
			* Updated rJava from rJava_0.9-5 to rJava_0.9-6

	'''February 2014''' (since MiToBo version [[Downloads \| 1.3]])		'''February 2014''' (since MiToBo version [[Downloads \| 1.3]])
	* Bugfix in neurite skeleton graph		* Bugfix in neurite skeleton graph
	* SWC files for single neurites are now generated and stored		* SWC files for single neurites are now generated and stored

2014-02-03T12:52:06Z

Updates

← Older revision		Revision as of 14:52, 3 February 2014
Line 43:		Line 43:
	----<br>		----<br>

	'''~~Februar~~ 2014''' (since MiToBo version [[Downloads \| 1.3]])		'''February 2014''' (since MiToBo version [[Downloads \| 1.3]])
	* Bugfix in neurite skeleton graph		* Bugfix in neurite skeleton graph
	* SWC files for single neurites are now generated and stored		* SWC files for single neurites are now generated and stored

2014-02-03T12:51:50Z

Updates

← Older revision		Revision as of 14:51, 3 February 2014
Line 41:		Line 41:
	=== Updates ===		=== Updates ===

	'''~~Since~~ MiToBo version [[Downloads \| 1.3]]~~'''~~		----<br>

			'''Februar 2014''' (since MiToBo version [[Downloads \| 1.3]])
	* Bugfix in neurite skeleton graph		* Bugfix in neurite skeleton graph
	* SWC files for single neurites are now generated and stored		* SWC files for single neurites are now generated and stored

2014-02-03T12:49:12Z

Neuron Analyzer 2D

← Older revision		Revision as of 14:49, 3 February 2014
Line 37:		Line 37:
	'''Example images'''<br/>		'''Example images'''<br/>
	[http://www.informatik.uni-halle.de/mitobo/downloads/neuron_examples.zip Neuron example images]		[http://www.informatik.uni-halle.de/mitobo/downloads/neuron_examples.zip Neuron example images]


			=== Updates ===

			'''Since MiToBo version [[Downloads \| 1.3]]'''
			* Bugfix in neurite skeleton graph
			* SWC files for single neurites are now generated and stored

2014-02-03T09:32:27Z

Neuron Analyzer 2D

← Older revision		Revision as of 11:32, 3 February 2014
Line 5:		Line 5:

	The ''Neuron Analyzer 2D'' is available since release version 1.1 of MiToBo. [[File:NeuronAnalyzer2D.png\|right\|link=]]		The ''Neuron Analyzer 2D'' is available since release version 1.1 of MiToBo. [[File:NeuronAnalyzer2D.png\|right\|link=]]
			<br/>
			'''Published in:'''<br/>
			''D. Misiak, S. Posch, .M. Lederer, C. Reinke, S. Hüttelmaier and B. Möller,<br/>
			'''"Extraction of protein profiles from primary neurons using active contour models and wavelets"'''.<br/>
			Journal of Neuroscience Methods, Volume 225, Pages 1-12, 30 March 2014.''

	'''Name of Plugin/Operator:'''<br/>		'''Name of Plugin/Operator:'''<br/>

2014-01-31T10:52:15Z

Neuron Analyzer 2D