Features - Revision history

Moeller at 09:40, 31 January 2017

2017-01-31T09:40:17Z

@@ Line 1: / Line 1: @@
 __NOTOC__
-The Microscope Image Analysis Toolbox MiToBo contains a lot of new features for scientists, who want to develop<br/>
+The Microscope Image Analysis Toolbox MiToBo is a collection of basic and advanced image processing and analysis tools and algorithms.<br>
-new algorithms in the field of image analysis and processing, and for those who want to use<br/>
+They for example subsume...
-custom plugins from [http://rsbweb.nih.gov/ij/ ImageJ] in their daily research.<br/>
+<ul>
-MiToBo's main features are:
+Finally, besides providing ready-to-use image analysis functionality MiToBo also contains a lot of valueable features for scientists, who want to develop<br/>
 <ul>
-<li> an advanced '''Operator Concept''':<br/>
+<li> an advanced '''operator concept''':<br/>
-MiToBo relies on the operator concept of [http://informatik.uni-halle.de/alida/ Alida]. <br/>
+MiToBo relies on the operator concept of [http://informatik.uni-halle.de/alida/ Alida]. Alida is a library to ease the development of data analysis algorithms including mechanisms for automatic generation of user interfaces,<br>
 fully automatic documentation of analysis procedures, and inherent support for developing workflows.<br/>
 MiToBo adopts all these features:
@@ Line 15: / Line 46: @@
 <li> results of image analysis procedures are automatically linked to a directed graph structure documenting the
 entire image analysis process,<br> i.e. every result of a certain operator or sequence of operations is associated with a '''history graph''' in XML format
-<li> for all operators graphical and commandline interfaces are automatically generated
+<li> for all operators '''graphical and command line interfaces''' are automatically generated
-<li> all operators can directly be used in ImageJ without need for additional programming effort
+<li> all operators can '''directly be used in ImageJ''' without need for additional programming effort
 </ul>
-In addition, also more complex tools are included, take a look at the [[applications | applications page]] for some examples.
+<li> additional '''data types''':<br/>
 <br/>
 </ul><br>

Moeller at 08:39, 21 February 2013

2013-02-21T08:39:29Z

← Older revision		Revision as of 10:39, 21 February 2013
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	[[file:Grappa_logo.png\|left\|link=]]		[[file:Grappa_logo.png\|left\|link=]]
	<ul>		<ul>
	<li> '''Grappa''' - a graphical programming editor:<br>		<li> '''Grappa''' - a graphical programming editor<br><br>
	The operator concept of Alida allows for generic handling of operators.<br>		The operator concept of Alida allows for generic handling of operators.<br>
	Thereby not only GUIs can automatically be generated, but also graphical		Thereby not only GUIs can automatically be generated, but also graphical

Moeller at 08:39, 21 February 2013

2013-02-21T08:39:00Z

← Older revision		Revision as of 10:39, 21 February 2013
Line 1:		Line 1:
	__NOTOC__		__NOTOC__
	The Microscope Image Analysis Toolbox MiToBo contains a lot of new features for scientists, who want to develop<br/>		The Microscope Image Analysis Toolbox MiToBo contains a lot of new features for scientists, who want to develop<br/>
	new algorithms in the field of ~~custom~~ image analysis and processing, and for those who want to use<br/>		new algorithms in the field of image analysis and processing, and for those who want to use<br/>
	custom plugins from [http://rsbweb.nih.gov/ij/ ImageJ] in their daily research.<br/>		custom plugins from [http://rsbweb.nih.gov/ij/ ImageJ] in their daily research.<br/>

Line 36:		Line 36:
	<br/>		<br/>
	</ul><br>		</ul><br>
	Finally, MiToBo ~~also~~ includes a graphical editor for workflow development:<br><br>		Finally, MiToBo includes a graphical editor for user-friendly workflow development:<br><br>

	[[file:Grappa_logo.png\|left\|link=]]		[[file:Grappa_logo.png\|left\|link=]]

Moeller at 08:37, 21 February 2013

2013-02-21T08:37:00Z

@@ Line 22: / Line 22: @@
 MiToBo defines a set of its own data types. For example, a new image data type was developed to improve the<br/>
 [http://rsbweb.nih.gov/ij/ ImageJ] image classes.<br/><br/>
 <li> a large collection of '''Applications''':<br/>
@@ Line 39: / Line 35: @@
 In addition, also more complex tools are included, take a look at the [[applications | applications page]] for some examples.
 <br/>
 </ul>

Moeller at 08:19, 21 February 2013

2013-02-21T08:19:15Z

← Older revision		Revision as of 10:19, 21 February 2013
Line 1:		Line 1:
	__NOTOC__		__NOTOC__
	The Microscope Image Analysis Toolbox MiToBo contains a lot of new features for scientists, who want to develop<br/>		The Microscope Image Analysis Toolbox MiToBo contains a lot of new features for scientists, who want to develop<br/>
	new ~~plugins and~~ algorithms in the field of custom image analysis and processing, and those who want to use<br/>		new algorithms in the field of custom image analysis and processing, and for those who want to use<br/>
	custom plugins from [http://rsbweb.nih.gov/ij/ ImageJ] in their daily research.~~<br/>~~<br/>		custom plugins from [http://rsbweb.nih.gov/ij/ ImageJ] in their daily research.<br/>

	~~A list of contained~~ features ~~and their description in short detail can be found below.<br/><br/>~~		MiToBo's main features are:

	'''~~Operators~~'''<br/>		<ul>
	MiToBo ~~is based~~ on the operator ~~and auto-documentation concepts~~ of [http://informatik.uni-halle.de/alida/ Alida]. <br/>		<li> an advanced '''Operator Concept''':<br/>
	~~By developing~~ Alida~~-conform operators~~, ~~all image processing steps~~<br/>		MiToBo relies on the operator concept of [http://informatik.uni-halle.de/alida/ Alida]. <br/>
	~~can be~~ linked to a directed graph structure~~, which allows '''self-documentation''' of~~ the entire image analysis process.<br/>		Alida is a library to ease the development of data analysis algorithms including mechanisms for automatic generation of user interfaces,<br>
	~~Each resulting data object, being the~~ result of a certain operator or sequence of operations, is associated with a~~<br/>~~		fully automatic documentation of analysis procedures, and inherent support for developing workflows.<br/>
	'''history graph''' in XML format.<br/><br/>		MiToBo adopts all these features:
			<ul>
			<li> results of image analysis procedures are automatically linked to a directed graph structure documenting the
			entire image analysis process,<br> i.e. every result of a certain operator or sequence of operations is associated with a '''history graph''' in XML format
			<li> for all operators graphical and commandline interfaces are automatically generated
			<li> all operators can directly be used in ImageJ without need for additional programming effort
			</ul><br>

	~~'''Plugins'''<br/>~~		<li> additional '''Data types''':<br/>
	~~The well known and very powerful plugin concept of [http://rsbweb.nih.gov/ij/ ImageJ] is also available in MiToBo.~~<~~br/~~>
	~~Every user and developer, using MiTobo, can easily create new plugins and customize existing [http://rsbweb.nih.gov/ij/plugins/index.html ImageJ plugins],<br/>~~
	~~to use the automatic documentation of the plugin via the operator concept of MiToBo for instance.<br/><br/>~~

	'''Data types'''<br/>
	MiToBo defines a set of its own data types. For example, a new image data type was developed to improve the<br/>		MiToBo defines a set of its own data types. For example, a new image data type was developed to improve the<br/>
	[http://rsbweb.nih.gov/ij/ ImageJ] image classes.<br/><br/>		[http://rsbweb.nih.gov/ij/ ImageJ] image classes.<br/><br/>

	'''~~Applications~~'''<br/>		<li> '''Grappa''' - a graphical programming editor:<br>
	~~Using the plugin and~~ operator concept ~~combined with the large amount~~ of ~~already implemented datatypes and~~ operators,<br/>		The operator concept of Alida allows for generic handling of operators. Thereby not only GUIs can automatically be generated, but also graphical
	a ~~huge couple~~ of ~~applications on biological and biomedical images can be developed.~~<br/><br/>		programming is significantly simplified. Alida includes Grappa, a graphical programming editor for designing workflows, which is also shipped with MiToBo and provides user with an intuitive tool for developing sophisticated image analysis workflows.<br><br>
	~~Some example applications can be found on~~ the [[applications \| applications page]].
			<li> a large collection of '''Applications''':<br/>
			MiToBo not only provides a framework for developing new image analysis algorithms,<br>
			but also ships with a collection of ready-to-use image analysis algorithms, e.g.
			<ul>
			<li> morphological operators
			<li> basic linear and non-linear filters
			<li> thresholding and component labeling
			<li> active contour segmentation
			<li> ...
			</ul>
			In addition, also more complex tools are included, take a look at the [[applications \| applications page]] for some examples.
	<br/>		<br/>
			</ul>

Misiak at 13:06, 25 April 2012

2012-04-25T13:06:17Z

← Older revision		Revision as of 15:06, 25 April 2012
Line 1:		Line 1:
	__NOTOC__		__NOTOC__
	The Microscope Image Analysis Toolbox MiToBo contains a lot of new features for ~~scientist~~, who want to develop<br/>		The Microscope Image Analysis Toolbox MiToBo contains a lot of new features for scientists, who want to develop<br/>
	new plugins and algorithms in the field of custom image analysis and processing, and those who want to use<br/>		new plugins and algorithms in the field of custom image analysis and processing, and those who want to use<br/>
	custom plugins from [http://rsbweb.nih.gov/ij/ ImageJ] in their daily research.<br/><br/>		custom plugins from [http://rsbweb.nih.gov/ij/ ImageJ] in their daily research.<br/><br/>

Moeller at 06:27, 8 June 2011

2011-06-08T06:27:31Z

← Older revision		Revision as of 08:27, 8 June 2011
Line 25:		Line 25:
	Using the plugin and operator concept combined with the large amount of already implemented datatypes and operators,<br/>		Using the plugin and operator concept combined with the large amount of already implemented datatypes and operators,<br/>
	a huge couple of applications on biological and biomedical images can be developed.<br/><br/>		a huge couple of applications on biological and biomedical images can be developed.<br/><br/>
	Some example applications can be found on the [[~~Applications~~ \| applications page]].		Some example applications can be found on the [[applications \| applications page]].
	<br/>		<br/>

Moeller at 06:26, 8 June 2011

2011-06-08T06:26:42Z

← Older revision		Revision as of 08:26, 8 June 2011
Line 7:		Line 7:

	'''Operators'''<br/>		'''Operators'''<br/>
	~~The~~ operator ~~concept is one~~ of ~~the major features in MiToBo~~. By developing ~~such~~ operators, ~~the~~ processing steps<br/>		MiToBo is based on the operator and auto-documentation concepts of [http://informatik.uni-halle.de/alida/ Alida]. <br/>
			By developing Alida-conform operators, all image processing steps<br/>
	can be linked to a directed graph structure, which allows '''self-documentation''' of the entire image analysis process.<br/>		can be linked to a directed graph structure, which allows '''self-documentation''' of the entire image analysis process.<br/>
	Each resulting data object, being the result of a certain operator or sequence of operations, is associated with a<br/>		Each resulting data object, being the result of a certain operator or sequence of operations, is associated with a<br/>
Line 23:		Line 24:
	'''Applications'''<br/>		'''Applications'''<br/>
	Using the plugin and operator concept combined with the large amount of already implemented datatypes and operators,<br/>		Using the plugin and operator concept combined with the large amount of already implemented datatypes and operators,<br/>
	a huge ~~coupple~~ of applications on biological and biomedical images can be developed.<br/><br/>		a huge couple of applications on biological and biomedical images can be developed.<br/><br/>
			Some example applications can be found on the [[Applications \| applications page]].
			<br/>

Misiak at 08:35, 26 October 2010

2010-10-26T08:35:27Z

← Older revision		Revision as of 10:35, 26 October 2010
Line 4:		Line 4:
	custom plugins from [http://rsbweb.nih.gov/ij/ ImageJ] in their daily research.<br/><br/>		custom plugins from [http://rsbweb.nih.gov/ij/ ImageJ] in their daily research.<br/><br/>

	A list of contained features and their description in detail can be found below.<br/><br/>		A list of contained features and their description in short detail can be found below.<br/><br/>

	'''Operators'''<br/>		'''Operators'''<br/>

Misiak at 08:35, 26 October 2010

2010-10-26T08:35:17Z

← Older revision		Revision as of 10:35, 26 October 2010
Line 4:		Line 4:
	custom plugins from [http://rsbweb.nih.gov/ij/ ImageJ] in their daily research.<br/><br/>		custom plugins from [http://rsbweb.nih.gov/ij/ ImageJ] in their daily research.<br/><br/>

	A list of ~~all~~ contained features and their description in detail can be found below.<br/><br/>		A list of contained features and their description in detail can be found below.<br/><br/>

	'''Operators'''<br/>		'''Operators'''<br/>