Downloads

Requirements

MiToBo requires Java 1.6 or later.

The following external jars are needed to run MiToBo plugins and use the code:

• ImageJ, Version 1.44
• XMLBeans, Version 2.5.0
• XStream, Version 1.3.1
• LIBSVM, Version 3.1
• Loci Tools, Version 4.2.2
• JAI ImageIO, Version 1.1 (only required for MiToBo 0.9)

For using explicite active contours (snakes) in MiToBo, additionally the following library is required:

• Jama, Version 1.0.2

MiToBo also relies on some libraries provided by the MiToBo project itself.
For using snakes in particular native C++ libraries are required.
If you download the MiToBo binaries you will find all of them included in the zip file.
A list of all project libraries required can be found at the bottom of this page.

Current release (v0.9.6)

• MiToBo Binaries zip (includes MiToBo binaries, license information and additional jars provided by the MiToBo project)
• MiToBo Sources zip (includes only the MiToBo sources)
• MiToBo API zip

All versions of MiToBo

Version	Binaries	Sources	API	Date
0.96	zip	zip	zip	September 01, 2011
0.95	zip	zip	zip	June 08, 2011 (updated June 22nd, 2011)
0.9	zip tar.gz	zip tar.gz	zip tar.gz	October 26, 2010

Manual

Detailed information about MiToBo, its API and usage, can be found in the user and programmer manual.

• MiToBo-Manual, Version 0.9.6 pdf

Project internal libraries

Note:
You do not need to download these libraries explizitly if you downloaded the zip file from above.
All project internal libraries are included there!

The zip files contain a selection the following jars, depending on the version of MiToBo:

• ALDGraphml, Version 0.9.6 (Alida extensions for graphML):
  • Binary jar
• MTBXml, Version 0.9.6 (MiToBo XML I/O for several datatypes, based on XMLBeans):
  • Binary jar
• libJNI_Cgal_Polygon2D.{so|dll}:
  • native C++ library needed for snakes classes, based on CGAL classes: 32-bit Linux 64-bit Linux 32-bit Windows

The following library is only required for MiToBo-0.9:

• MTBImageIO-Ext, Version 0.9 (improved image I/O based on ImageIO-Ext):
  • Binary jar
  • Source code zip
  • Alternatively, the ImageIO-Ext library can be used, which depends on the JAI ImageIO library and the JAI library.
    MTBImageIO-Ext is simply the TIFF part of ImageIO-Ext with slight adjustments to remove dependency on the JAI library.

Additional resources

• Chipory - a graph visualization tool for displaying MiToBo history graphs
  Chipory is an extended version of the Chisio software developed at the Bilkent University in Turkey.

The zip file below contains all necessary files. Download this file and unpack it into a folder of your choice.

• To use Chipory on a Linux system with 32-bit architecture just type './Chipory.sh'.
  
• In case that your machine has a 64-bit architecture running Linux, call './Chipory_64.sh'.
  
• For Windows with 32-bit architecture a self extracting installer including an executable of Chipory is available.

Download the current release: [http

• Chipory binary zip
• self extracting installer for Windows chipory-setup.exe

Source code for Chipory is available upon request.

Example images

• Scratch assay images

Logo

• MiToBo logo as PDF or PNG