Applications/CellMigrationAnalyzer: Difference between revisions
From MiToBo
Jump to navigationJump to search
Line 15: | Line 15: | ||
<br> | <br> | ||
(since MiToBo version 1.3) | (since MiToBo version 1.3) | ||
'''Additional operators contained in the package:'''<br/> | |||
* FluorescentCellSegmenter | |||
** segments fluorescently labeled cells from images/ image sequences | |||
* CellSegmentationPostprocessing | |||
** postprocesses objects from binary images/ image sequences (e.g. size filtering) | |||
* CellTrackerBipartite | |||
** tracks (i.e. creates a label image sequence) objects from binary image sequences based on the objects' locations and areas | |||
* MigrationAnalyzer | |||
** calculates migration and shape descriptors of objects from a label image sequence and also intensity descriptors if a corresponding fluorescence image sequence is given | |||
'''Example images'''<br/> | '''Example images'''<br/> | ||
[http://www.informatik.uni-halle.de/mitobo/downloads/tracking_examples.zip tracking sequences] | [http://www.informatik.uni-halle.de/mitobo/downloads/tracking_examples.zip tracking sequences] |
Revision as of 15:32, 26 August 2014
Cell Migration Analyzer
Description:
- Segments and tracks fluorescently labeled cells from time lapse image sequences
- Descriptors characterizing migratory behaviour, morphological parameters and fluorescence distributions are reported
Name of Plugin/Operator:
de.unihalle.informatik.MiToBo.apps.singleCellTracking2D.CellMigrationAnalyzer
(since MiToBo version 1.3)
Additional operators contained in the package:
- FluorescentCellSegmenter
- segments fluorescently labeled cells from images/ image sequences
- CellSegmentationPostprocessing
- postprocesses objects from binary images/ image sequences (e.g. size filtering)
- CellTrackerBipartite
- tracks (i.e. creates a label image sequence) objects from binary image sequences based on the objects' locations and areas
- MigrationAnalyzer
- calculates migration and shape descriptors of objects from a label image sequence and also intensity descriptors if a corresponding fluorescence image sequence is given
Example images
tracking sequences