Applications: Difference between revisions
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Several image processing pipelines have already been developed in MiToBo. <br/> | Several image processing pipelines have already been developed in MiToBo. <br/> | ||
Below you can find selected example applications, some of them have been published already. | Below you can find selected example applications, some of them have been published already. | ||
== MiCA == | |||
presented at<br/> | |||
''B. Möller and S. Posch,<br/> | |||
'''"MiCA - Easy Cell Image Analysis with Normalized Snakes"'''.<br/> | |||
Workshop on Microscopic Image Analysis with Applications in Biology (MIAAB '11), Heidelberg, Germany, September 2011.'' | |||
'''Name of Plugin:'''<br/> | |||
CellImageAnalyzer_2D (since MiToBo version 0.9.6) | |||
'''Main features:'''<br/> | |||
* Integrated analysis of multi-channel microscope images of cells | |||
* Allows for segmentation of cells, nuclei and sub-cellular structures | |||
* Techniques subsume active contours, wavelets, morphological operators, and others | |||
* Visualization and quantitative summary of segmentation results | |||
== Scratch assay analysis == | == Scratch assay analysis == | ||
Revision as of 16:59, 1 September 2011
Several image processing pipelines have already been developed in MiToBo.
Below you can find selected example applications, some of them have been published already.
MiCA
presented at
B. Möller and S. Posch,
"MiCA - Easy Cell Image Analysis with Normalized Snakes".
Workshop on Microscopic Image Analysis with Applications in Biology (MIAAB '11), Heidelberg, Germany, September 2011.
Name of Plugin:
CellImageAnalyzer_2D (since MiToBo version 0.9.6)
Main features:
- Integrated analysis of multi-channel microscope images of cells
- Allows for segmentation of cells, nuclei and sub-cellular structures
- Techniques subsume active contours, wavelets, morphological operators, and others
- Visualization and quantitative summary of segmentation results
Scratch assay analysis
published in
M. Glaß, B. Möller, A. Zirkel, K. Wächter, S. Hüttelmaier and S. Posch,
"Scratch Assay Analysis with Topology-preserving Level Sets and Texture Measures".
Proc. of Iberian Conference on Pattern Recognition and Image Analysis (IbPRIA '11), LNCS 6669, pp. 100-108, Springer, Las Palmas de Gran Canaria, Spain, June 2011.
Name of Plugin:
ScratchAssay_Analysis (since MiToBo version 0.9.5)
Description:
- Quantifies the scratch area in monolayer cell culture images with levelset techniques
- Combines the results from images of different time points in a results table
Example images
Scratch assay images
