Applications/CellMigrationAnalyzer: Difference between revisions

Revision as of 15:32, 26 August 2014

Description:

Segments and tracks fluorescently labeled cells from time lapse image sequences
Descriptors characterizing migratory behaviour, morphological parameters and fluorescence distributions are reported

Name of Plugin/Operator:
de.unihalle.informatik.MiToBo.apps.singleCellTracking2D.CellMigrationAnalyzer
(since MiToBo version 1.3)

Additional operators contained in the package:

FluorescentCellSegmenter
- segments fluorescently labeled cells from images/ image sequences
CellSegmentationPostprocessing
- postprocesses objects from binary images/ image sequences (e.g. size filtering)
CellTrackerBipartite
- tracks (i.e. creates a label image sequence) objects from binary image sequences based on the objects' locations and areas
MigrationAnalyzer
- calculates migration and shape descriptors of objects from a label image sequence and also intensity descriptors if a corresponding fluorescence image sequence is given

Example images
tracking sequences

@@ Line 15: / Line 15: @@
 <br>
 (since MiToBo version 1.3)
+'''Additional operators contained in the package:'''<br/>
+* FluorescentCellSegmenter
+** segments fluorescently labeled cells from images/ image sequences
+* CellSegmentationPostprocessing
+** postprocesses objects from binary images/ image sequences (e.g. size filtering)
+* CellTrackerBipartite
+** tracks (i.e. creates a label image sequence) objects from binary image sequences based on the objects' locations and areas
+* MigrationAnalyzer
+** calculates migration and shape descriptors of objects from a label image sequence and also intensity descriptors if a corresponding fluorescence image sequence is given
 '''Example images'''<br/>
 [http://www.informatik.uni-halle.de/mitobo/downloads/tracking_examples.zip tracking sequences]