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Several image processing pipelines have already been developed in MiToBo.
Below you can find selected example applications, some of them have been published already.

Scratch assay analysis

published in
M. Glaß, B. Möller, A. Zirkel, K. Wächter, S. Hüttelmaier and S. Posch,
"Scratch Assay Analysis with Topology-preserving Level Sets and Texture Measures".
Proc. of Iberian Conference on Pattern Recognition and Image Analysis (IbPRIA '11), to appear soon, Las Palmas de Gran Canaria, Spain, June 2011.

Name of Plugin:
ScratchAssay_Analysis (MiToBo version 0.9.5)


  • Quantifies the scratch area in monolayer cell culture images with levelset techniques
  • Combines the results from images of different time points in a results table

Example images
Scratch assay images