Applications/CellMigrationAnalyzer: Difference between revisions

From MiToBo
Jump to navigationJump to search
Line 15: Line 15:
<br>
<br>
(since MiToBo version 1.3)
(since MiToBo version 1.3)
'''Additional operators contained in the package:'''<br/>
* FluorescentCellSegmenter
** segments fluorescently labeled cells from images/ image sequences
* CellSegmentationPostprocessing
** postprocesses objects from binary images/ image sequences (e.g. size filtering)
* CellTrackerBipartite
** tracks (i.e. creates a label image sequence) objects from binary image sequences based on the objects' locations and areas
* MigrationAnalyzer
** calculates migration and shape descriptors of objects from a label image sequence and also intensity descriptors if a corresponding fluorescence image sequence is given




'''Example images'''<br/>
'''Example images'''<br/>
[http://www.informatik.uni-halle.de/mitobo/downloads/tracking_examples.zip tracking sequences]
[http://www.informatik.uni-halle.de/mitobo/downloads/tracking_examples.zip tracking sequences]

Revision as of 15:32, 26 August 2014

Cell Migration Analyzer

Tracking ES-2.gif
Speeds.png
Directionalities.png


Description:

  • Segments and tracks fluorescently labeled cells from time lapse image sequences
  • Descriptors characterizing migratory behaviour, morphological parameters and fluorescence distributions are reported

Name of Plugin/Operator:
de.unihalle.informatik.MiToBo.apps.singleCellTracking2D.CellMigrationAnalyzer
(since MiToBo version 1.3)

Additional operators contained in the package:

  • FluorescentCellSegmenter
    • segments fluorescently labeled cells from images/ image sequences
  • CellSegmentationPostprocessing
    • postprocesses objects from binary images/ image sequences (e.g. size filtering)
  • CellTrackerBipartite
    • tracks (i.e. creates a label image sequence) objects from binary image sequences based on the objects' locations and areas
  • MigrationAnalyzer
    • calculates migration and shape descriptors of objects from a label image sequence and also intensity descriptors if a corresponding fluorescence image sequence is given


Example images
tracking sequences