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The PaCeQuant Plugin and Corresponding Tools

MiToBo logo PaCeQuant.png

The PaCeQuant plugin for fully automatic cell segmentation and shape feature extraction is part of MiToBo since release 1.8.6.

More details about the plugin and its usage can be found on the PaCeQuant's website.

Main publication:

Over the time the main plugin has been supplemented with several complementary tools to ease cell shape analysis and feature visualization:

  • the R package PaCeQuantAna for statistical analysis of feature data and creation of publication-ready plots of feature distributions and statistical analysis results

Further references where PaCeQuant and the tools are documented or have been used:

  • B. Möller, Y. Poeschl, S. Klemm, and K. Bürstenbinder,
    Morphological Analysis of Leaf Epidermis Pavement Cells with PaCeQuant.
    In F. Cvrčková and V. Žárský, editors, Plant Cell Morphogenesis: Methods and Protocols, chapter 22, pages 329-349, Springer New York, New York, NY, 2019.