Applications/ScratchAssayAnalyzer

From MiToBo
Jump to navigationJump to search



Scratch assay analysis

published in
M. Glaß, B. Möller, A. Zirkel, K. Wächter, S. Hüttelmaier and S. Posch,
"Scratch Assay Analysis with Topology-preserving Level Sets and Texture Measures".
Proc. of Iberian Conference on Pattern Recognition and Image Analysis (IbPRIA '11), LNCS 6669, pp. 100-108, Springer, Las Palmas de Gran Canaria, Spain, June 2011.

M. Glaß, B. Möller, A. Zirkel, K. Wächter, S. Hüttelmaier and S. Posch,
"Cell migration analysis: Segmenting scratch assay images with level sets and support vector machines".
Pattern Recognition, Volume 45, Issue 9, pp. 3154-3165, September 2012.

Name of Plugin/Operator:
ScratchAssayAnalyzer (since MiToBo version 0.9.5)

Description:

  • Quantifies the scratch area in monolayer cell culture images with levelset techniques
  • Applicable to brightfield and fluorescence images
  • Combines the results from images of different time points in a results table


Example images
Scratch assay images