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For detailed information on the installation process take a look at the [[Installation]] page.
For detailed information on the installation process take a look at the [[Installation]] page.


== Current release (v1.3)==
== Current release (v1.4)==
The current release of MiToBo is 1.3.
The current release of MiToBo is 1.4.


Since release 1.3 we support Maven for managing MiToBo's resources.<br> You can download the release files as well as the Maven artifacts from our Maven server.
Since release 1.3 we support Maven for managing MiToBo's resources.<br> You can download the release files as well as the Maven artifacts from our Maven server.
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For using MiToBo with ImageJ it is the easiest to download the distribution zipfile,<br>
For using MiToBo with ImageJ it is the easiest to download the distribution zipfile,<br>


[https://moon.informatik.uni-halle.de/archiva/repository/releases/de/unihalle/informatik/MiToBo/mitobo-plugins/1.3/mitobo-plugins-1.3-bin.zip https://moon.informatik.uni-halle.de/archiva/repository/releases/de/unihalle/informatik/MiToBo/mitobo-plugins/1.3/mitobo-plugins-1.3-bin.zip]<br>
[https://moon.informatik.uni-halle.de/archiva/repository/releases/de/unihalle/informatik/MiToBo/mitobo-plugins/1.4/mitobo-plugins-1.4-bin.zip https://moon.informatik.uni-halle.de/archiva/repository/releases/de/unihalle/informatik/MiToBo/mitobo-plugins/1.4/mitobo-plugins-1.4-bin.zip]<br>


which already includes '''''all''''' dependencies and ships with some scripts to run MiToBo's operators and plugins out of the box. See the [http://www2.informatik.uni-halle.de/agprbio/mitobo/index.php/Installation installation instructions] for further information.
which already includes '''''all''''' dependencies and ships with some scripts to run MiToBo's operators and plugins out of the box. See the [http://www2.informatik.uni-halle.de/agprbio/mitobo/index.php/Installation installation instructions] for further information.
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On the server you can find...
On the server you can find...
* ... the MiToBo core distribution including documentation, release 1.3: [https://moon.informatik.uni-halle.de/archiva/browse/de.unihalle.informatik.MiToBo/mitobo/1.3 https://moon.informatik.uni-halle.de/archiva/browse/de.unihalle.informatik.MiToBo/mitobo/1.3]
* ... the MiToBo core distribution including documentation, release 1.4: [https://moon.informatik.uni-halle.de/archiva/browse/de.unihalle.informatik.MiToBo/mitobo/1.4 https://moon.informatik.uni-halle.de/archiva/browse/de.unihalle.informatik.MiToBo/mitobo/1.4]
* ... MiToBo's ImageJ plugins to use MiToBo with ImageJ, release 1.3: [https://moon.informatik.uni-halle.de/archiva/browse/de.unihalle.informatik.MiToBo/mitobo-plugins/1.3 https://moon.informatik.uni-halle.de/archiva/browse/de.unihalle.informatik.MiToBo/mitobo-plugins/1.3]
* ... MiToBo's ImageJ plugins to use MiToBo with ImageJ, release 1.4: [https://moon.informatik.uni-halle.de/archiva/browse/de.unihalle.informatik.MiToBo/mitobo-plugins/1.4 https://moon.informatik.uni-halle.de/archiva/browse/de.unihalle.informatik.MiToBo/mitobo-plugins/1.4]
* ... and some helper jars (... note that these are already included in the distribution jars of the core and the plugins packages):
* ... and some helper jars (... note that these are already included in the distribution jars of the core and the plugins packages):
** mitobo-help: [https://moon.informatik.uni-halle.de/archiva/browse/de.unihalle.informatik.MiToBo/mitobo-help/1.3 https://moon.informatik.uni-halle.de/archiva/browse/de.unihalle.informatik.MiToBo/mitobo-help/1.3]
** mitobo-help: [https://moon.informatik.uni-halle.de/archiva/browse/de.unihalle.informatik.MiToBo/mitobo-help/2.0 https://moon.informatik.uni-halle.de/archiva/browse/de.unihalle.informatik.MiToBo/mitobo-help/2.0]
** mitobo-xml: [https://moon.informatik.uni-halle.de/archiva/browse/de.unihalle.informatik.MiToBo/mitobo-xml/1.3 https://moon.informatik.uni-halle.de/archiva/browse/de.unihalle.informatik.MiToBo/mitobo-xml/1.3]
** mitobo-xml: [https://moon.informatik.uni-halle.de/archiva/browse/de.unihalle.informatik.MiToBo/mitobo-xml/2.0 https://moon.informatik.uni-halle.de/archiva/browse/de.unihalle.informatik.MiToBo/mitobo-xml/2.0]


MiToBo's implementation requires at least Java 1.6 (but Java 1.7 is not yet fully supported).
MiToBo's implementation requires at least Java 1.6 (but Java 1.7 is not yet fully supported).

Revision as of 15:43, 28 July 2014

Here you can find the current release of MiToBo for download. Likewise older versions and additional libraries required to run MiToBo can be found here.

For detailed information on the installation process take a look at the Installation page.

Current release (v1.4)

The current release of MiToBo is 1.4.

Since release 1.3 we support Maven for managing MiToBo's resources.
You can download the release files as well as the Maven artifacts from our Maven server.

Using MiToBo with ImageJ 1.x:
For using MiToBo with ImageJ it is the easiest to download the distribution zipfile,

https://moon.informatik.uni-halle.de/archiva/repository/releases/de/unihalle/informatik/MiToBo/mitobo-plugins/1.4/mitobo-plugins-1.4-bin.zip

which already includes all dependencies and ships with some scripts to run MiToBo's operators and plugins out of the box. See the installation instructions for further information.


On the server you can find...

MiToBo's implementation requires at least Java 1.6 (but Java 1.7 is not yet fully supported).

Manual

Detailed information about MiToBo, its API and usage, can be found in MiToBo's User and Programmer Guide.

  • MiToBo-Guide, Version 1.0 pdf



Additional resources

  • Chipory - a graph visualization tool for displaying MiToBo history graphs
    Chipory is an extended version of the Chisio software developed at the Bilkent University in Turkey.


The zip file below contains all necessary files. Download this file and unpack it into a folder of your choice.

  • To use Chipory on a Linux system with 32-bit architecture just type './Chipory.sh'.
  • In case that your machine has a 64-bit architecture running Linux, call './Chipory_64.sh'.
  • For Windows with 32-bit architecture a self extracting installer including an executable of Chipory is available.


Download the current release:

Source code for Chipory is available upon request.

Example images



Earlier releases of MiToBo (< 1.3)

Since release 1.3 MiToBo's resources are available from our Maven archive server: [1]
Binaries, sources and documentation for versions older than the current release, but at least of version 1.3 or newer can be found there.
All other releases can be accessed via the list below.

Version Binaries Sources API Date
1.2 zip zip zip May 17th, 2013
1.1 zip zip zip March 1st, 2013
1.0.5 zip zip zip October 23rd, 2012
1.0.1 zip zip zip July 6th, 2012
1.0.0 zip zip zip April 26th, 2012
0.96 zip zip zip September 01, 2011
0.95 zip zip zip June 08, 2011 (updated June 22nd, 2011)
0.9 zip tar.gz zip tar.gz zip tar.gz October 26, 2010


Requirements (for MiToBo < 1.3)

MiToBo requires Java 1.6 or later.

Note: Java 1.7 is currently not fully supported!

The following external jars are needed to run MiToBo plugins and use the code.
Note that the binary zip file already includes all jars required, there is no need for explicit download!

MiToBo depends on the following external jars:

  • JAI ImageIO, Version 1.1 (only required for MiToBo 0.9)

Project internal libraries

MiToBo also relies on some libraries provided by the MiToBo project itself.
In particular XML schemes for representing the history graphs and MiToBo's online help are included in separate jar archives.

Note:
You do not need to download these libraries explicitly. If you download the binary zip file all jars and libraries are already included.

The MiToBo internal archive files included in the zip file are the following ones:

  • ALDGraphml, Version 1.0.0 (Alida extensions for graphML):
  • MTBXml, Version 1.0.0 (MiToBo XML I/O for several datatypes, based on XMLBeans):
  • MiToBo-Help, Version 1.0.0 (MiToBo JavaHelp pages):

The following library is only required for MiToBo-0.9:

  • MTBImageIO-Ext, Version 0.9 (improved image I/O based on ImageIO-Ext):
    • Binary jar
    • Source code zip
    • Alternatively, the ImageIO-Ext library can be used, which depends on the JAI ImageIO library and the JAI library.
      MTBImageIO-Ext is simply the TIFF part of ImageIO-Ext with slight adjustments to remove dependency on the JAI library.