Installation: Difference between revisions

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# go to the '''MiToBo-bin/plugins/''' directory
# go to the '''MiToBo-bin/plugins/''' directory
#* copy the ''Mi_To_Bo.jar'' to your ''../ImageJ/plugins/'' directory (''C:\Program Files\ImageJ\plugins'' for example)
#* copy the ''Mi_To_Bo.jar'' to your ''../ImageJ/plugins/'' directory (''C:\Program Files\ImageJ\plugins'' for example)
#* copy all jars to your ''../ImageJ/plugins/jars/'' directory <span style="text-decoration: underline;">except</span> the ij.jar and jars already existing<br/>('''Notice:''' MiToBo [[downloads|requires]] explicite versions of some jars, other versions may not work probably!)<br/><br/>
#* copy all jars to your ''../ImageJ/plugins/jars/'' directory <span style="text-decoration: underline;">except</span> the ij.jar and jars already existing<br/>('''Notice:''' MiToBo requires explicite versions of some jars, other versions may not work probably, see [[downloads|requirements]].)<br/><br/>
# go to the '''MiToBo-bin/lib/''' directory
# go to the '''MiToBo-bin/lib/''' directory
#* copy the ''libwin32'' directory to your ''../ImageJ/'' directory<br/><br/>
#* copy the ''libwin32'' directory to your ''../ImageJ/'' directory<br/><br/>
Line 25: Line 25:
#* copy the ''MiToBo_Runner.txt'' to your ''../ImageJ/macros/toolsets/'' directory<br/><br/>
#* copy the ''MiToBo_Runner.txt'' to your ''../ImageJ/macros/toolsets/'' directory<br/><br/>
# configurate your ImageJ startup<br/><br/>
# configurate your ImageJ startup<br/><br/>
:* update ImageJ configuration file ''../ImageJ/ImageJ.cfg'' an add the following line<br/><br/>'''-Djava.library.path="C:\Programme\ImageJ\libwin32" -cp "C:\Programme\ImageJ\ij.jar" ij.ImageJ'''<br\><br/>('''Notice:''' The ImageJ directory path depends on your ImageJ installation)<br/><br/>Example of an ImageJ.cfg file:
:* edit ImageJ configuration file ''../ImageJ/ImageJ.cfg'' and add the following line<br/><br/>'''-Djava.library.path="C:\Programme\ImageJ\libwin32" -cp "C:\Programme\ImageJ\ij.jar" ij.ImageJ'''<br\><br/>('''Notice:''' The ImageJ directory path depends on your ImageJ installation)<br/><br/>Example of an ImageJ.cfg file:
     C:\Program Files\ImageJ\
     C:\Program Files\ImageJ\
     C:\Program Files\Java\jre6\bin\javaw.exe
     C:\Program Files\Java\jre6\bin\javaw.exe

Revision as of 11:45, 25 April 2012

Linux

... comming soon!

Windows

After downloading and extracting the MiToBo Binaries zip you will find the following structure in the MiToBo-bin directory

  • docs - includes the MiToBo manual
  • lib - includes nesessary libaries for Linux and Windows
  • licences - includes MiToBo license and licences for other software used by MiToBo
  • macros - includes the MiToBo macro toolset
  • plugins - includes MiToBo jar and other jars used by MiToBo
  • oprunner.sh and run.sh - scripts for Linux OS


For installing MiToBo into an existing ImageJ installation perform the following steps:

  1. go to the MiToBo-bin/plugins/ directory
    • copy the Mi_To_Bo.jar to your ../ImageJ/plugins/ directory (C:\Program Files\ImageJ\plugins for example)
    • copy all jars to your ../ImageJ/plugins/jars/ directory except the ij.jar and jars already existing
      (Notice: MiToBo requires explicite versions of some jars, other versions may not work probably, see requirements.)

  2. go to the MiToBo-bin/lib/ directory
    • copy the libwin32 directory to your ../ImageJ/ directory

  3. go to the MiToBo-bin/macros/toolsets/ directory
    • copy the MiToBo_Runner.txt to your ../ImageJ/macros/toolsets/ directory

  4. configurate your ImageJ startup

  • edit ImageJ configuration file ../ImageJ/ImageJ.cfg and add the following line

    -Djava.library.path="C:\Programme\ImageJ\libwin32" -cp "C:\Programme\ImageJ\ij.jar" ij.ImageJ<br\>
    (Notice: The ImageJ directory path depends on your ImageJ installation)

    Example of an ImageJ.cfg file:
   C:\Program Files\ImageJ\
   C:\Program Files\Java\jre6\bin\javaw.exe
   -Djava.library.path="C:\Program Files\ImageJ\libwin32" -cp "C:\Program Files\ImageJ\ij.jar" ij.ImageJ


  • as an alternative you can start ImageJ from command line
  • open your Windows command line
  • move to the ../ImageJ/ directoy
  • type the following command:
  java -Djava.library.path="C:\Program Files\ImageJ\libwin32" -cp "C:\Program Files\ImageJ\ij.jar" ij.ImageJ