Package | Description |
---|---|
de.unihalle.informatik.MiToBo.apps.neurites2D | |
de.unihalle.informatik.MiToBo.apps.neurons2D |
Modifier and Type | Field and Description |
---|---|
private MTBNeurite2DSet |
NeuriteDetector2DAlgos.detectedNeuritesSet
Final set of detected neurites.
|
private MTBNeurite2DSet |
NeuriteExtractor2D.extractedNeurites |
private MTBNeurite2DSet |
NeuriteParticleDetector2D.neuriteSet
Set of neurite regions for detecting particle only inside these regions, an
be null for detection all particles in the complete image
|
private MTBNeurite2DSet |
NeuriteMolProfExtractor2D.neuriteSet |
Modifier and Type | Field and Description |
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private Vector<MTBNeurite2DSet> |
NeuriteDetector2D.detectedNeurites
Vector of detected neurite sets for each image.
|
Modifier and Type | Method and Description |
---|---|
MTBNeurite2DSet |
NeuriteDetector2DAlgos.getDetectedNeuritesSet()
Get set of detected neurites.
|
MTBNeurite2DSet |
NeuriteExtractor2D.getExtractedNeurites()
Get extracted neurites as result of the NeuriteExtraction2D operator.
|
MTBNeurite2DSet |
NeuriteParticleDetector2D.getNeuriteSet()
Get the input set of neurites.
|
MTBNeurite2DSet |
NeuriteMolProfExtractor2D.getNeuriteSet()
Get the input set of neurites.
|
Modifier and Type | Method and Description |
---|---|
Vector<MTBNeurite2DSet> |
NeuriteDetector2D.getDetectedNeurites()
Get vector of detected neurite sets for each image.
|
Modifier and Type | Method and Description |
---|---|
void |
NeuriteExtractor2D.cleanNeurites(MTBNeurite2DSet tmpNeuriteSet)
Method to clean up the extracted neurites, due to multiple features along a
NSG path or feature shifts at the start point due to different NSG lengths.
|
void |
NeuriteParticleDetector2D.setNeuriteSet(MTBNeurite2DSet _neuriteSet)
Set the input set of neurites.
|
Constructor and Description |
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NeuriteMolProfExtractor2D(MTBImage _moleculeImage,
Integer[] _moleculeChannels,
MTBNeurite2DSet _neuriteSet,
Boolean _verbose)
Constructor to create a new neurite profile extraction operator.
|
NeuriteParticleDetector2D(Integer _particleChannel,
ParticleDetectorUWT2D _particleDetector,
MTBNeurite2DSet _neuriteSet,
Boolean _verbose)
Constructor.
|
Modifier and Type | Method and Description |
---|---|
private void |
NeuronAnalyzer2D.extractMolProf(MTBImage moleculeImage,
MTBNeurite2DSet neuriteSet,
String imagePath,
String outPath)
Extraction of molecular profiles along the detected neurites.
|
private MTBRegion2DSet |
NeuronAnalyzer2D.extractParticles(MTBImage particleImage,
MTBNeurite2DSet neuriteSet)
Extraction of molecular particles along the detected neurites.
|
Copyright © 2010–2020 Martin Luther University Halle-Wittenberg, Institute of Computer Science, Pattern Recognition and Bioinformatics. All rights reserved.