Several image processing pipelines have already been developed in MiToBo.
Below you can find selected example applications, some of them have been published already.
- PaCeQuant (released with MiToBo 1.8.6),
for quantifying pavement cell shape in a high-throughput manner
- MTB Cell Counter (since MiToBo 1.5),
a tool for semi-automatic labeling and counting of spot-like structures like, e.g., plastides, stress granules or p-bodies
- MiCA - MiToBo Cell Image Analyzer
for segmenting cell boundaries and sub-cellular particles in fluorescent microscopy images
- Neuron Analyzer 2D
for segmenting the area of neurites and quantify protein concentrations within these neurites
- Scratch Assay Analyzer
for analysis of collective cell migration based on scratch/ wound closure assay images
- Cell Migration Analyzer
for migration analysis based on single cell tracking
- Actin Analyzer 2D (since MiToBo 1.4)
for quantifying and comparing actin microfilament structures