de.unihalle.informatik.MiToBo.apps.particles2D

Class HyperStackParticleDetectorUWT2D

java.lang.Object

de.unihalle.informatik.Alida.operator.ALDOperator

de.unihalle.informatik.MiToBo.apps.particles2D.HyperStackParticleDetectorUWT2D

All Implemented Interfaces:

de.unihalle.informatik.Alida.datatypes.ALDConfigurationValidator, de.unihalle.informatik.Alida.operator.events.ALDOperatorExecutionProgressEventListener, EventListener, loci.common.StatusReporter

@ALDAOperator(genericExecutionMode=ALL,
              level=STANDARD)
public class HyperStackParticleDetectorUWT2D
extends de.unihalle.informatik.Alida.operator.ALDOperator
implements loci.common.StatusReporter

A particle detector that runs the ParticleDetectorUWT2D given as input (with all parameters set) over all slices of the input image for a given channel. The info strings of the resulting region sets are set to "z=.,t=.,c=channelIdx".

Author:

Oliver Gress

Nested Class Summary

Nested classes/interfaces inherited from class de.unihalle.informatik.Alida.operator.ALDOperator

de.unihalle.informatik.Alida.operator.ALDOperator.HidingMode, de.unihalle.informatik.Alida.operator.ALDOperator.HistoryConstructionMode

Field Summary

Fields

Modifier and Type	Field and Description
protected int	channelIdx
protected MTBImage	inputImage
protected ParticleDetectorUWT2D	pdetector
protected MTBRegion2DSetBag	resultingRegionsets
protected Vector<loci.common.StatusListener>	statusListeners vector of installed StatusListeners

Fields inherited from class de.unihalle.informatik.Alida.operator.ALDOperator

completeDAG, name, operatorExecutionEventlistenerList, portHashAccess, verbose, versionProvider

Constructor Summary

Constructors

Constructor and Description
HyperStackParticleDetectorUWT2D()
HyperStackParticleDetectorUWT2D(MTBImage inputImage, ParticleDetectorUWT2D pdetector, int channelIdx)

Method Summary

Modifier and Type	Method and Description
void	addStatusListener(loci.common.StatusListener statuslistener)
ParticleDetectorUWT2D	getParticleDetector2D()
MTBRegion2DSetBag	getResultingRegionsets()
void	notifyListeners(loci.common.StatusEvent e)
protected void	operate()
void	removeStatusListener(loci.common.StatusListener statuslistener)
void	setInputImage(MTBImage inputimage)
void	validateCustom()

Methods inherited from class de.unihalle.informatik.Alida.operator.ALDOperator

addOperatorExecutionProgressEventListener, addParameter, addParameter, addParameterUnconditioned, fieldContained, fireOperatorExecutionProgressEvent, getALDPortHashAccessKey, getConstructionMode, getDocumentation, getHidingMode, getInactiveParameterNames, getInInoutNames, getInInoutNames, getInNames, getInOutNames, getMissingRequiredInputs, getName, getNumParameters, getOutInoutNames, getOutNames, getParameter, getParameterDescriptor, getParameterDescriptorUnconditioned, getParameterNames, getParameterUnconditioned, getSupplementalNames, getVerbose, getVersion, handleOperatorExecutionProgressEvent, hasInOutParameters, hasParameter, isAnnotatedParameter, isConfigured, print, print, print, printInterface, printInterface, readHistory, readResolve, reinitializeParameterDescriptors, removeOperatorExecutionProgressEventListener, removeParameter, runOp, runOp, runOp, setConstructionMode, setConstructionMode, setConstructionMode, setHidingMode, setName, setParameter, setParameterUnconditioned, setVerbose, toStringVerbose, unconfiguredItems, validate, validateGeneric, writeHistory, writeHistory, writeHistory

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

inputImage

@Parameter(label="Input image",
           required=true,
           direction=IN,
           mode=STANDARD,
           dataIOOrder=1,
           description="Input image")
protected transient MTBImage inputImage

pdetector

@Parameter(label="Particle detector",
           required=true,
           direction=IN,
           mode=STANDARD,
           dataIOOrder=2,
           description="Particle detector for 2D-images based on UWT")
protected ParticleDetectorUWT2D pdetector

channelIdx

@Parameter(label="Channel index",
           required=true,
           direction=IN,
           mode=STANDARD,
           dataIOOrder=3,
           description="Index of the channel where particles are to be detected")
protected int channelIdx

resultingRegionsets

@Parameter(label="Resulting regionsets",
           required=false,
           direction=OUT,
           mode=STANDARD,
           dataIOOrder=1,
           description="Bag of resulting region sets")
protected MTBRegion2DSetBag resultingRegionsets

statusListeners

protected transient Vector<loci.common.StatusListener> statusListeners

vector of installed StatusListeners

Constructor Detail

HyperStackParticleDetectorUWT2D

public HyperStackParticleDetectorUWT2D()
                                throws de.unihalle.informatik.Alida.exceptions.ALDOperatorException

Throws:

de.unihalle.informatik.Alida.exceptions.ALDOperatorException

HyperStackParticleDetectorUWT2D

public HyperStackParticleDetectorUWT2D(MTBImage inputImage,
                                       ParticleDetectorUWT2D pdetector,
                                       int channelIdx)
                                throws de.unihalle.informatik.Alida.exceptions.ALDOperatorException

Throws:

de.unihalle.informatik.Alida.exceptions.ALDOperatorException

Method Detail

getResultingRegionsets

public MTBRegion2DSetBag getResultingRegionsets()

validateCustom

public void validateCustom()
                    throws de.unihalle.informatik.Alida.exceptions.ALDOperatorException

Overrides:

validateCustom in class de.unihalle.informatik.Alida.operator.ALDOperator

Throws:

de.unihalle.informatik.Alida.exceptions.ALDOperatorException

operate

protected void operate()
                throws de.unihalle.informatik.Alida.exceptions.ALDOperatorException,
                       de.unihalle.informatik.Alida.exceptions.ALDProcessingDAGException

Specified by:

operate in class de.unihalle.informatik.Alida.operator.ALDOperator

Throws:

de.unihalle.informatik.Alida.exceptions.ALDOperatorException

de.unihalle.informatik.Alida.exceptions.ALDProcessingDAGException

setInputImage

public void setInputImage(MTBImage inputimage)

getParticleDetector2D

public ParticleDetectorUWT2D getParticleDetector2D()

addStatusListener

public void addStatusListener(loci.common.StatusListener statuslistener)

Specified by:

addStatusListener in interface loci.common.StatusReporter

notifyListeners

public void notifyListeners(loci.common.StatusEvent e)

Specified by:

notifyListeners in interface loci.common.StatusReporter

removeStatusListener

public void removeStatusListener(loci.common.StatusListener statuslistener)

Specified by:

removeStatusListener in interface loci.common.StatusReporter