| cmdTools.cellAnalysis |
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| cmdTools.mtb_imagetools |
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| cmdTools.tracking.multitarget |
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| cmdTools.visualization |
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| de.unihalle.informatik.MiToBo.apps.biofilms |
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| de.unihalle.informatik.MiToBo.apps.cellMorphology |
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| de.unihalle.informatik.MiToBo.apps.cells2D |
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| de.unihalle.informatik.MiToBo.apps.cytoplasm2D |
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| de.unihalle.informatik.MiToBo.apps.cytoskeleton |
Provides tools and applications for quantifying actin filament structures in
microscopy images of cells.
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| de.unihalle.informatik.MiToBo.apps.datatypes.cellImages |
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| de.unihalle.informatik.MiToBo.apps.minirhizotron.datatypes |
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| de.unihalle.informatik.MiToBo.apps.minirhizotron.segmentation |
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| de.unihalle.informatik.MiToBo.apps.minirhizotron.utils |
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| de.unihalle.informatik.MiToBo.apps.neurites2D |
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| de.unihalle.informatik.MiToBo.apps.neurons2D |
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| de.unihalle.informatik.MiToBo.apps.nuclei2D |
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| de.unihalle.informatik.MiToBo.apps.particles2D |
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| de.unihalle.informatik.MiToBo.apps.plantCells.plastids |
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| de.unihalle.informatik.MiToBo.apps.plantCells.stromules |
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| de.unihalle.informatik.MiToBo.apps.scratchAssay |
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| de.unihalle.informatik.MiToBo.apps.singleCellTracking2D |
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| de.unihalle.informatik.MiToBo.apps.xylem |
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| de.unihalle.informatik.MiToBo.clustering |
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| de.unihalle.informatik.MiToBo.color.conversion |
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| de.unihalle.informatik.MiToBo.color.tools |
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| de.unihalle.informatik.MiToBo.core.batch.provider.input.swing |
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| de.unihalle.informatik.MiToBo.core.batch.provider.output.swing |
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| de.unihalle.informatik.MiToBo.core.dataconverter |
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| de.unihalle.informatik.MiToBo.core.dataio.provider.cmdline |
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| de.unihalle.informatik.MiToBo.core.dataio.provider.swing |
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| de.unihalle.informatik.MiToBo.core.dataio.provider.swing.components |
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| de.unihalle.informatik.MiToBo.core.dataio.provider.xmlbeans |
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| de.unihalle.informatik.MiToBo.core.datatypes |
Provides basic datatypes for MiToBo.
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| de.unihalle.informatik.MiToBo.core.datatypes.defines |
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| de.unihalle.informatik.MiToBo.core.datatypes.images |
Contains MiToBo image data types.
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| de.unihalle.informatik.MiToBo.core.datatypes.interfaces |
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| de.unihalle.informatik.MiToBo.core.datatypes.neurites |
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| de.unihalle.informatik.MiToBo.core.datatypes.wrapper |
Provides wrapper for for input and output datatypes for MiToBo operators.
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| de.unihalle.informatik.MiToBo.core.exceptions |
Defines MiToBo exceptions.
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| de.unihalle.informatik.MiToBo.core.grappa |
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| de.unihalle.informatik.MiToBo.core.gui |
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| de.unihalle.informatik.MiToBo.core.helpers |
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| de.unihalle.informatik.MiToBo.core.imageJ |
Provides convenience classes for interaction with ImageJ system.
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| de.unihalle.informatik.MiToBo.core.operator |
Provides basis classes for MiToBo operator concept.
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| de.unihalle.informatik.MiToBo.enhance |
Provides classes for image preprocessing and improvement (no filters!).
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| de.unihalle.informatik.MiToBo.features |
Provides operators for calculating features from given images, e.g., statistical
indicators or texture measures.
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| de.unihalle.informatik.MiToBo.features.contours |
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| de.unihalle.informatik.MiToBo.features.regions |
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| de.unihalle.informatik.MiToBo.features.statistical |
Provides operators for calculating statistical image features, e.g., average
intensities or variances, or moments of the intensity distribution.
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| de.unihalle.informatik.MiToBo.features.texture |
Provides operators for calculating texture features from given images, e.g.,
Haralick measures.
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| de.unihalle.informatik.MiToBo.features.texture.lbp |
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| de.unihalle.informatik.MiToBo.fields |
Provides classes for calculating gradient vector flow fields, image gradient
fields, potential fields and other possible fields from different data sources.
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| de.unihalle.informatik.MiToBo.filters.linear |
Provides classes implementing linear systems.
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| de.unihalle.informatik.MiToBo.filters.linear.anisotropic |
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| de.unihalle.informatik.MiToBo.filters.nonlinear |
Provides classes implementing nonlinear image filters.
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| de.unihalle.informatik.MiToBo.filters.vesselness |
Provides various operators for enhancing vessel-like structures in images.
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| de.unihalle.informatik.MiToBo.gui |
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| de.unihalle.informatik.MiToBo.imageJ.plugins.cellCounter.datatypes |
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| de.unihalle.informatik.MiToBo.imageJ.plugins.cellCounter.operators |
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| de.unihalle.informatik.MiToBo.imageJ.plugins.cellCounter.xml |
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| de.unihalle.informatik.MiToBo.io.dirs |
Provides classes for dealing with directories.
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| de.unihalle.informatik.MiToBo.io.files |
Provides classes for handling (non-)image files.
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| de.unihalle.informatik.MiToBo.io.images |
Provides classes for handling image files.
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| de.unihalle.informatik.MiToBo.io.importer |
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| de.unihalle.informatik.MiToBo.io.tools |
Contains helper classes for image I/O.
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| de.unihalle.informatik.MiToBo.math |
Provides mathematical functionality.
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| de.unihalle.informatik.MiToBo.math.arrays.filter |
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| de.unihalle.informatik.MiToBo.math.distributions.impl |
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| de.unihalle.informatik.MiToBo.math.distributions.interfaces |
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| de.unihalle.informatik.MiToBo.math.fitting |
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| de.unihalle.informatik.MiToBo.math.graphs |
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| de.unihalle.informatik.MiToBo.math.images |
Provides mathematical operations on images.
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| de.unihalle.informatik.MiToBo.math.optimization |
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| de.unihalle.informatik.MiToBo.math.statistics |
This package contains oeprators for performing statistical analysis of data sets.
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| de.unihalle.informatik.MiToBo.morphology |
Provides classes for morphological processing of binary images.
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| de.unihalle.informatik.MiToBo.segmentation.activecontours.datatypes |
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| de.unihalle.informatik.MiToBo.segmentation.activecontours.energies |
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| de.unihalle.informatik.MiToBo.segmentation.activecontours.exceptions |
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| de.unihalle.informatik.MiToBo.segmentation.basics |
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| de.unihalle.informatik.MiToBo.segmentation.contours.extraction |
Provides classes for performing contour extractions from regions or other
image elements.
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| de.unihalle.informatik.MiToBo.segmentation.evaluation |
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| de.unihalle.informatik.MiToBo.segmentation.evaluation.measures |
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| de.unihalle.informatik.MiToBo.segmentation.helpers |
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| de.unihalle.informatik.MiToBo.segmentation.levelset.core |
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| de.unihalle.informatik.MiToBo.segmentation.levelset.core.energies.derivable |
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| de.unihalle.informatik.MiToBo.segmentation.levelset.nonPDE |
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| de.unihalle.informatik.MiToBo.segmentation.levelset.PDE.datatypes |
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| de.unihalle.informatik.MiToBo.segmentation.levelset.PDE.solver |
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| de.unihalle.informatik.MiToBo.segmentation.regions.convert |
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| de.unihalle.informatik.MiToBo.segmentation.regions.filling |
Provides operators for filling wholes in binary 2D/3D regions.
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| de.unihalle.informatik.MiToBo.segmentation.regions.labeling |
Provides classes to perform region labeling to find connected components in binarized images.
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| de.unihalle.informatik.MiToBo.segmentation.regions.mser |
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| de.unihalle.informatik.MiToBo.segmentation.snakes.datatypes |
Provides basic datatypes for MiToBo explicit active contours (snakes).
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| de.unihalle.informatik.MiToBo.segmentation.snakes.energies |
Provides classes with energies to be used with MiToBo snakes.
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| de.unihalle.informatik.MiToBo.segmentation.snakes.energies.paramAdapt |
Provides classes with parameter adaptation for energies to be used with MiToBo snakes.
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| de.unihalle.informatik.MiToBo.segmentation.snakes.optimize |
Provides classes for performing snake-based segmentation on images.
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| de.unihalle.informatik.MiToBo.segmentation.snakes.optimize.stepsize |
Provides classes for calculating several update strategies of the snake step size gamma.
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| de.unihalle.informatik.MiToBo.segmentation.snakes.optimize.termination |
Provides classes for calculating several termination strategies of the snake optimization.
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| de.unihalle.informatik.MiToBo.segmentation.thresholds |
Provides classes for thresholding grayscale and color images.
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| de.unihalle.informatik.MiToBo.tools |
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| de.unihalle.informatik.MiToBo.tools.image |
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| de.unihalle.informatik.MiToBo.tools.interactive |
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| de.unihalle.informatik.MiToBo.tools.strings |
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| de.unihalle.informatik.MiToBo.tools.system |
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| de.unihalle.informatik.MiToBo.topology |
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| de.unihalle.informatik.MiToBo.tracking.multitarget.algo |
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| de.unihalle.informatik.MiToBo.tracking.multitarget.datatools |
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| de.unihalle.informatik.MiToBo.tracking.multitarget.datatypes.abstracts |
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| de.unihalle.informatik.MiToBo.tracking.multitarget.datatypes.impl |
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| de.unihalle.informatik.MiToBo.tracking.multitarget.datatypes.interfaces |
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| de.unihalle.informatik.MiToBo.tracking.multitarget.distributions.abstracts |
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| de.unihalle.informatik.MiToBo.tracking.multitarget.distributions.impl |
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| de.unihalle.informatik.MiToBo.tracking.multitarget.eval |
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| de.unihalle.informatik.MiToBo.transforms |
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| de.unihalle.informatik.MiToBo.visualization.colormappings |
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| de.unihalle.informatik.MiToBo.visualization.drawing |
Provides operators to visualize data types.
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| de.unihalle.informatik.MiToBo.visualization.plots |
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