de.unihalle.informatik.MiToBo.apps.singleCellTracking2D

Class TrajectoryExtraction2D

java.lang.Object

de.unihalle.informatik.MiToBo.apps.singleCellTracking2D.TrajectoryExtraction2D

public class TrajectoryExtraction2D
extends Object

Field Summary

Fields

Modifier and Type	Field and Description
private int	bgLabel
private Vector<Integer>	excluded
private MTBImage	labelImg
private int	minTrackLength
(package private) int	sizeT
(package private) int	sizeX
(package private) int	sizeY
private Vector<Trajectory2D>	trajectories

Constructor Summary

Constructors

Constructor and Description
TrajectoryExtraction2D(MTBImage labelImg, int minTrackLength)

Method Summary

Modifier and Type	Method and Description
private void	discardShortTracks() delete trajectories whose length is too short
void	extractCentroids() extract centroids from labeled regions
void	extractCentroids(MTBImage maskImg, boolean include, double factor)
Vector<Integer>	getExcluded()
Vector<Trajectory2D>	getTrajectories()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

labelImg

private transient MTBImage labelImg

trajectories

private Vector<Trajectory2D> trajectories

minTrackLength

private int minTrackLength

sizeX

int sizeX

sizeY

int sizeY

sizeT

int sizeT

bgLabel

private final int bgLabel

See Also:

Constant Field Values

excluded

private Vector<Integer> excluded

Constructor Detail

TrajectoryExtraction2D

public TrajectoryExtraction2D(MTBImage labelImg,
                              int minTrackLength)

Parameters:

labelImg -

minTrackLength -

Method Detail

extractCentroids

public void extractCentroids()

extract centroids from labeled regions

extractCentroids

public void extractCentroids(MTBImage maskImg,
                             boolean include,
                             double factor)

Parameters:

maskImg -

include -

discardShortTracks

private void discardShortTracks()

delete trajectories whose length is too short

getTrajectories

public Vector<Trajectory2D> getTrajectories()

Returns:

trajectory vector

getExcluded

public Vector<Integer> getExcluded()