MorphologyAnalyzer2D.FeatureNames (mitobo 2.0 API)

java.lang.Object
- java.lang.Enum<MorphologyAnalyzer2D.FeatureNames>
- - de.unihalle.informatik.MiToBo.features.MorphologyAnalyzer2D.FeatureNames

All Implemented Interfaces:

Serializable, Comparable<MorphologyAnalyzer2D.FeatureNames>

Enclosing class:

MorphologyAnalyzer2D
```
public static enum MorphologyAnalyzer2D.FeatureNames
extends Enum<MorphologyAnalyzer2D.FeatureNames>
```
Set of region features calculated from segmented cell regions.

Enum Constant Summary

Enum Constants
Enum Constant and Description
`Area` Area in pixels.
`AvgBranchLength` Average length of branches.
`AvgConcavity` Average concavity of boundary pixels.
`AvgDistBranchEndpointsToBackground` Average distance of branch endpoints to background.
`AvgDistIndentationMidPoints` Average of pairwise distances between indentation midpoints.
`AvgLengthApicalIndentations` Average length of apical parts of detected indentations.
`AvgLengthApicalProtrusions` Average length of apical parts of detected protrusions.
`AvgLengthBasalIndentations` Average length of basal parts of detected indentations.
`AvgLengthBasalProtrusions` Average length of basal parts of detected protrusions.
`AvgLengthBaselineIndentations` Average length of baselines of detected indentations.
`AvgLengthBaselineProtrusions` Average length of baselines of detected protrusions.
`AvgLengthEquatorIndentations` Average length of the equators of detected indentations.
`AvgLengthEquatorProtrusions` Average length of the equators of detected protrusions.
`AvgLengthIndentations` Average length of detected indentations.
`AvgLengthProtrusions` Average length of detected protrusions.
`BranchCount` Number of skeleton branches.
`Circularity` Relation of area to circle of equal size.
`ConvexHullArea` Area of convex hull in pixels.
`ConvexHullConvexity` Ratio of convex hull perimeter and region perimeter.
`ConvexHullPerimeter` Perimeter of convex hull, i.e., number of contour pixels of convex hull given 8-neighborhood along contour.
`ConvexHullRoundness` Same as circularity, but with perimeter of convex hull instead of region perimeter.
`Eccentricity` Elongation based on ratio of major to minor axes lengths.
`LargestEmptyCircle` Radius of largest circle that completely fits into the region boundary.
`Length` Length of region's major axis.
`LongestPathLength` Length of longest path in skeleton.
`MarginRoughness` Average deviation in tangential angles compared to circle.
`MaxCoreRegionWidth` Maximum of all distances of the indentation midpoint to their nearest neighbors, i.e. no midpoint has a larger distance to its closest neighbor than this value.
`MinCoreRegionWidth` Minimum of all distances of the indentation midpoints to their nearest neighbors, i.e. the distance between any of two midpoints is at least this value.
`NonProtrusionArea` Area of region part not belonging to any of the detected protrusions.
`NumberOfProtrusions` Number of protrusions.
`Object` Integer ID of region (for reference purposes).
`Perimeter` Length of boundary.
`Solidity` Ratio of convex hull area to cell area.
`StdDevConcavity` Standard deviation of region's concavities.
`Width` Length of region's minor axis.

Method Summary

All Methods Static Methods Concrete Methods
Modifier and Type	Method and Description
`static MorphologyAnalyzer2D.FeatureNames`	`valueOf(String name)` Returns the enum constant of this type with the specified name.
`static MorphologyAnalyzer2D.FeatureNames[]`	`values()` Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum
clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object
getClass, notify, notifyAll, wait, wait, wait

- Enum Constant Detail
  - Object
```
public static final MorphologyAnalyzer2D.FeatureNames Object
```
    Integer ID of region (for reference purposes).
  - Area
```
public static final MorphologyAnalyzer2D.FeatureNames Area
```
    Area in pixels.
  - Perimeter
```
public static final MorphologyAnalyzer2D.FeatureNames Perimeter
```
    Length of boundary.
  - Length
```
public static final MorphologyAnalyzer2D.FeatureNames Length
```
    Length of region's major axis.
  - Width
```
public static final MorphologyAnalyzer2D.FeatureNames Width
```
    Length of region's minor axis.
  - Circularity
```
public static final MorphologyAnalyzer2D.FeatureNames Circularity
```
    Relation of area to circle of equal size.
  - Eccentricity
```
public static final MorphologyAnalyzer2D.FeatureNames Eccentricity
```
    Elongation based on ratio of major to minor axes lengths.
  - Solidity
```
public static final MorphologyAnalyzer2D.FeatureNames Solidity
```
    Ratio of convex hull area to cell area.
  - MarginRoughness
```
public static final MorphologyAnalyzer2D.FeatureNames MarginRoughness
```
    Average deviation in tangential angles compared to circle.
  - AvgConcavity
```
public static final MorphologyAnalyzer2D.FeatureNames AvgConcavity
```
    Average concavity of boundary pixels.
  - StdDevConcavity
```
public static final MorphologyAnalyzer2D.FeatureNames StdDevConcavity
```
    Standard deviation of region's concavities.
  - ConvexHullArea
```
public static final MorphologyAnalyzer2D.FeatureNames ConvexHullArea
```
    Area of convex hull in pixels.
  - ConvexHullPerimeter
```
public static final MorphologyAnalyzer2D.FeatureNames ConvexHullPerimeter
```
    Perimeter of convex hull, i.e., number of contour pixels of convex hull given 8-neighborhood along contour.
  - ConvexHullConvexity
```
public static final MorphologyAnalyzer2D.FeatureNames ConvexHullConvexity
```
    Ratio of convex hull perimeter and region perimeter.
  - ConvexHullRoundness
```
public static final MorphologyAnalyzer2D.FeatureNames ConvexHullRoundness
```
    Same as circularity, but with perimeter of convex hull instead of region perimeter.
  - BranchCount
```
public static final MorphologyAnalyzer2D.FeatureNames BranchCount
```
    Number of skeleton branches.
  - AvgBranchLength
```
public static final MorphologyAnalyzer2D.FeatureNames AvgBranchLength
```
    Average length of branches.
  - LongestPathLength
```
public static final MorphologyAnalyzer2D.FeatureNames LongestPathLength
```
    Length of longest path in skeleton.
  - AvgDistBranchEndpointsToBackground
```
public static final MorphologyAnalyzer2D.FeatureNames AvgDistBranchEndpointsToBackground
```
    Average distance of branch endpoints to background.
  - NumberOfProtrusions
```
public static final MorphologyAnalyzer2D.FeatureNames NumberOfProtrusions
```
    Number of protrusions.
  - NonProtrusionArea
```
public static final MorphologyAnalyzer2D.FeatureNames NonProtrusionArea
```
    Area of region part not belonging to any of the detected protrusions.
  - AvgLengthProtrusions
```
public static final MorphologyAnalyzer2D.FeatureNames AvgLengthProtrusions
```
    Average length of detected protrusions.
  - AvgLengthApicalProtrusions
```
public static final MorphologyAnalyzer2D.FeatureNames AvgLengthApicalProtrusions
```
    Average length of apical parts of detected protrusions.
  - AvgLengthBasalProtrusions
```
public static final MorphologyAnalyzer2D.FeatureNames AvgLengthBasalProtrusions
```
    Average length of basal parts of detected protrusions.
  - AvgLengthBaselineProtrusions
```
public static final MorphologyAnalyzer2D.FeatureNames AvgLengthBaselineProtrusions
```
    Average length of baselines of detected protrusions.
  - AvgLengthEquatorProtrusions
```
public static final MorphologyAnalyzer2D.FeatureNames AvgLengthEquatorProtrusions
```
    Average length of the equators of detected protrusions.
  - AvgLengthIndentations
```
public static final MorphologyAnalyzer2D.FeatureNames AvgLengthIndentations
```
    Average length of detected indentations.
  - AvgLengthApicalIndentations
```
public static final MorphologyAnalyzer2D.FeatureNames AvgLengthApicalIndentations
```
    Average length of apical parts of detected indentations.
  - AvgLengthBasalIndentations
```
public static final MorphologyAnalyzer2D.FeatureNames AvgLengthBasalIndentations
```
    Average length of basal parts of detected indentations.
  - AvgLengthBaselineIndentations
```
public static final MorphologyAnalyzer2D.FeatureNames AvgLengthBaselineIndentations
```
    Average length of baselines of detected indentations.
  - AvgLengthEquatorIndentations
```
public static final MorphologyAnalyzer2D.FeatureNames AvgLengthEquatorIndentations
```
    Average length of the equators of detected indentations.
  - AvgDistIndentationMidPoints
```
public static final MorphologyAnalyzer2D.FeatureNames AvgDistIndentationMidPoints
```
    Average of pairwise distances between indentation midpoints.
  - MinCoreRegionWidth
```
public static final MorphologyAnalyzer2D.FeatureNames MinCoreRegionWidth
```
    Minimum of all distances of the indentation midpoints to their nearest neighbors, i.e. the distance between any of two midpoints is at least this value.
  - MaxCoreRegionWidth
```
public static final MorphologyAnalyzer2D.FeatureNames MaxCoreRegionWidth
```
    Maximum of all distances of the indentation midpoint to their nearest neighbors, i.e. no midpoint has a larger distance to its closest neighbor than this value.
  - LargestEmptyCircle
```
public static final MorphologyAnalyzer2D.FeatureNames LargestEmptyCircle
```
    Radius of largest circle that completely fits into the region boundary.
    The radius is defined as the Euclidean distance of the point farest away from the boundary to the corresponding boundary. The point is determined as the global maximum of a distance transformation of the region.
- Method Detail
  - values
```
public static MorphologyAnalyzer2D.FeatureNames[] values()
```
    Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:
```
for (MorphologyAnalyzer2D.FeatureNames c : MorphologyAnalyzer2D.FeatureNames.values())
    System.out.println(c);
```
    Returns:
    
    an array containing the constants of this enum type, in the order they are declared
  - valueOf
```
public static MorphologyAnalyzer2D.FeatureNames valueOf(String name)
```
    Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)
    
    Parameters:
    
    name - the name of the enum constant to be returned.
    
    Returns:
    
    the enum constant with the specified name
    
    Throws:
    
    IllegalArgumentException - if this enum type has no constant with the specified name
    
    NullPointerException - if the argument is null

Enum MorphologyAnalyzer2D.FeatureNames

Enum Constant Summary

Method Summary

Methods inherited from class java.lang.Enum

Methods inherited from class java.lang.Object

Enum Constant Detail

Object

Area

Perimeter

Length

Width

Circularity

Eccentricity

Solidity

MarginRoughness

AvgConcavity

StdDevConcavity

ConvexHullArea

ConvexHullPerimeter

ConvexHullConvexity

ConvexHullRoundness

BranchCount

AvgBranchLength

LongestPathLength

AvgDistBranchEndpointsToBackground

NumberOfProtrusions

NonProtrusionArea

AvgLengthProtrusions

AvgLengthApicalProtrusions

AvgLengthBasalProtrusions

AvgLengthBaselineProtrusions

AvgLengthEquatorProtrusions

AvgLengthIndentations

AvgLengthApicalIndentations

AvgLengthBasalIndentations

AvgLengthBaselineIndentations

AvgLengthEquatorIndentations

AvgDistIndentationMidPoints

MinCoreRegionWidth

MaxCoreRegionWidth

LargestEmptyCircle

Method Detail

values

valueOf