Uses of Class
de.unihalle.informatik.MiToBo.gui.MTBTableModel

Packages that use MTBTableModel

Package	Description
de.unihalle.informatik.MiToBo.apps.biofilms
de.unihalle.informatik.MiToBo.apps.cellMorphology
de.unihalle.informatik.MiToBo.apps.cells2D
de.unihalle.informatik.MiToBo.apps.neurites2D
de.unihalle.informatik.MiToBo.apps.neurons2D
de.unihalle.informatik.MiToBo.apps.nuclei2D
de.unihalle.informatik.MiToBo.apps.scratchAssay
de.unihalle.informatik.MiToBo.apps.xylem
de.unihalle.informatik.MiToBo.clustering
de.unihalle.informatik.MiToBo.core.dataio.provider.swing
de.unihalle.informatik.MiToBo.core.dataio.provider.swing.components
de.unihalle.informatik.MiToBo.core.datatypes	Provides basic datatypes for MiToBo.
de.unihalle.informatik.MiToBo.features	Provides operators for calculating features from given images, e.g., statistical indicators or texture measures.
de.unihalle.informatik.MiToBo.features.regions
de.unihalle.informatik.MiToBo.segmentation.evaluation
de.unihalle.informatik.MiToBo.segmentation.snakes.optimize	Provides classes for performing snake-based segmentation on images.

Uses of MTBTableModel in de.unihalle.informatik.MiToBo.apps.biofilms

Fields in de.unihalle.informatik.MiToBo.apps.biofilms declared as MTBTableModel

Modifier and Type	Field and Description
private MTBTableModel	TexturalParameterExtractor.resultsTable
private MTBTableModel	ArealParameterExtractor.resultsTable

Methods in de.unihalle.informatik.MiToBo.apps.biofilms that return MTBTableModel

Modifier and Type	Method and Description
private MTBTableModel	TexturalParameterExtractor.makeTable()
private MTBTableModel	ArealParameterExtractor.makeTable()

Uses of MTBTableModel in de.unihalle.informatik.MiToBo.apps.cellMorphology

Fields in de.unihalle.informatik.MiToBo.apps.cellMorphology declared as MTBTableModel

Modifier and Type	Field and Description
private MTBTableModel	PaCeQuant.resultFeatureTable Table with region features.

Fields in de.unihalle.informatik.MiToBo.apps.cellMorphology with type parameters of type MTBTableModel

Modifier and Type	Field and Description
private Vector<MTBTableModel>	PaCeQuant.resultLobeFeatureTables (Optional) set of tables with type information and features per lobe.

Methods in de.unihalle.informatik.MiToBo.apps.cellMorphology that return MTBTableModel

Modifier and Type	Method and Description
private MTBTableModel	PaCeQuant.calculateRegionFeatures(MTBRegion2DSet regions, MTBImage labelImg) Extracts features for all detected and valid cell regions.
protected MTBTableModel	PaCeQuant.runFeatureExtractionPhase(MTBImage img, MTBRegion2DSet validRegions, MTBImage labelImg) Extracts features from given set of regions and corresponding images

Uses of MTBTableModel in de.unihalle.informatik.MiToBo.apps.cells2D

Subclasses of MTBTableModel in de.unihalle.informatik.MiToBo.apps.cells2D

Modifier and Type	Class and Description
class	Mica2DTableModel Implementation of a TableModel for the Granule Detector result table.

Uses of MTBTableModel in de.unihalle.informatik.MiToBo.apps.neurites2D

Fields in de.unihalle.informatik.MiToBo.apps.neurites2D declared as MTBTableModel

Modifier and Type	Field and Description
private MTBTableModel	NeuriteDetector2D.detectionResultTable
private MTBTableModel	NeuriteDetector2DAlgos.resultTable Result table showing the the detection and morphology measurements.

Methods in de.unihalle.informatik.MiToBo.apps.neurites2D that return MTBTableModel

Modifier and Type	Method and Description
MTBTableModel	NeuriteDetector2DAlgos.getResultTable() Get final result table of morphology measurements.
MTBTableModel	NeuriteDetector2D.getResultTable() Get the result table of the detected neurites.
private MTBTableModel	NeuriteDetector2D.makeTable() Create the result table and include the specific table header.

Constructors in de.unihalle.informatik.MiToBo.apps.neurites2D with parameters of type MTBTableModel

Constructor and Description

NeuriteDetector2DAlgos(MTBImage _inputImage, int _nucleiChannel, int _nucleusSize, double _nucleusRation, int[] _neuronChannels, double _niblackConstant, int _maxFragmentDistance, String _pathToFile, String _resultDir, NeuriteDetector2DAlgos.DetectorExternalEnergy _energyLabel, double _alpha, double _beta, double _stepSize, double _motionFraction, int _maxIterations, int _resampleConstant, int _maxSpineLength, int _neuriteMaskSize, Color _neuriteColor, MTBTableModel _table, Boolean _verbose, org.rosuda.JRI.Rengine _re) Constructor.

Uses of MTBTableModel in de.unihalle.informatik.MiToBo.apps.neurons2D

Fields in de.unihalle.informatik.MiToBo.apps.neurons2D declared as MTBTableModel

Modifier and Type	Field and Description
private MTBTableModel	NeuronAnalyzer2D.detectionResultTable

Methods in de.unihalle.informatik.MiToBo.apps.neurons2D that return MTBTableModel

Modifier and Type	Method and Description
MTBTableModel	NeuronAnalyzer2D.getDetectionResultTable() Get the result table of the detected neurites.

Uses of MTBTableModel in de.unihalle.informatik.MiToBo.apps.nuclei2D

Fields in de.unihalle.informatik.MiToBo.apps.nuclei2D declared as MTBTableModel

Modifier and Type	Field and Description
private MTBTableModel	NuclearParticleDetector2D.resultTable

Methods in de.unihalle.informatik.MiToBo.apps.nuclei2D that return MTBTableModel

Modifier and Type	Method and Description
MTBTableModel	NuclearParticleDetector2D.getResultTable() Get particle statistics.

Uses of MTBTableModel in de.unihalle.informatik.MiToBo.apps.scratchAssay

Fields in de.unihalle.informatik.MiToBo.apps.scratchAssay declared as MTBTableModel

Modifier and Type	Field and Description
private MTBTableModel	ScratchAssayAnalyzer.resultsTable

Methods in de.unihalle.informatik.MiToBo.apps.scratchAssay that return MTBTableModel

Modifier and Type	Method and Description
private MTBTableModel	ScratchAssayAnalyzer.makeTable() create results table
private MTBTableModel	ScratchAssaySVMTrainer.makeTable()

Uses of MTBTableModel in de.unihalle.informatik.MiToBo.apps.xylem

Fields in de.unihalle.informatik.MiToBo.apps.xylem declared as MTBTableModel

Modifier and Type	Field and Description
private MTBTableModel	XylemGrower.resultsTable A table containing information for each region
private MTBTableModel	XylemDetector.resultsTable A table containing information for each region

Methods in de.unihalle.informatik.MiToBo.apps.xylem that return MTBTableModel

Modifier and Type	Method and Description
MTBTableModel	XylemGrower.getResultsTable()
private MTBTableModel	XylemGrower.makeTable(MTBRegion2DSet regionSet, MTBImage labelImg, int imgWidth, int imgHeight) create results table

Methods in de.unihalle.informatik.MiToBo.apps.xylem with parameters of type MTBTableModel

Modifier and Type	Method and Description
void	XylemGrower.setResultsTable(MTBTableModel resultsTable)

Uses of MTBTableModel in de.unihalle.informatik.MiToBo.clustering

Fields in de.unihalle.informatik.MiToBo.clustering declared as MTBTableModel

Modifier and Type	Field and Description
private MTBTableModel	KMeans.clusterLabels List of assigned cluster indices, starting with 1.
private MTBTableModel	KMeans.data Data to be clustered.

Methods in de.unihalle.informatik.MiToBo.clustering that return MTBTableModel

Modifier and Type	Method and Description
MTBTableModel	KMeans.getDataLabels() Get assigned labels.

Methods in de.unihalle.informatik.MiToBo.clustering with parameters of type MTBTableModel

Modifier and Type	Method and Description
void	KMeans.setInputData(MTBTableModel inputData) Specify input data.

Uses of MTBTableModel in de.unihalle.informatik.MiToBo.core.dataio.provider.swing

Fields in de.unihalle.informatik.MiToBo.core.dataio.provider.swing declared as MTBTableModel

Modifier and Type	Field and Description
private MTBTableModel	MTBTableModelDataIOSwing.TableModelShowButton.data Data to be displayed.

Uses of MTBTableModel in de.unihalle.informatik.MiToBo.core.dataio.provider.swing.components

Constructors in de.unihalle.informatik.MiToBo.core.dataio.provider.swing.components with parameters of type MTBTableModel

Constructor and Description
MTBTableWindow(MTBTableModel mtm) Default constructor.

Uses of MTBTableModel in de.unihalle.informatik.MiToBo.core.datatypes

Methods in de.unihalle.informatik.MiToBo.core.datatypes that return MTBTableModel

Modifier and Type	Method and Description
MTBTableModel	MTBNeuriteSkelGraph.toSWC(String fileName, MTBImageByte neuronImage) Method to save neurite skeleton graph as SWC file.

Uses of MTBTableModel in de.unihalle.informatik.MiToBo.features

Fields in de.unihalle.informatik.MiToBo.features declared as MTBTableModel

Modifier and Type	Field and Description
private MTBTableModel	TileFeatureCalculatorResult.resultTable Result table for visual result inspection.
private MTBTableModel	MorphologyAnalyzer2D.table
private MTBTableModel	MorphologyAnalyzer3D.table

Methods in de.unihalle.informatik.MiToBo.features that return MTBTableModel

Modifier and Type	Method and Description
MTBTableModel	TileFeatureCalculatorResult.getResultTable() Get result table.
MTBTableModel	MorphologyAnalyzer2D.getTable()
MTBTableModel	MorphologyAnalyzer3D.getTable()

Uses of MTBTableModel in de.unihalle.informatik.MiToBo.features.regions

Fields in de.unihalle.informatik.MiToBo.features.regions declared as MTBTableModel

Modifier and Type	Field and Description
private MTBTableModel	Region2DSkeletonAnalyzer.resultFeatureTable Table with region skeleton features.

Methods in de.unihalle.informatik.MiToBo.features.regions that return MTBTableModel

Modifier and Type	Method and Description
MTBTableModel	Region2DSkeletonAnalyzer.getResultTable() Get table of calculated features.

Uses of MTBTableModel in de.unihalle.informatik.MiToBo.segmentation.evaluation

Fields in de.unihalle.informatik.MiToBo.segmentation.evaluation declared as MTBTableModel

Modifier and Type	Field and Description
protected MTBTableModel	GroundtruthEvaluation.resultTable Table with result data.

Methods in de.unihalle.informatik.MiToBo.segmentation.evaluation that return MTBTableModel

Modifier and Type	Method and Description
MTBTableModel	GroundtruthEvaluation.getResultTable() Get evaluation results.

Uses of MTBTableModel in de.unihalle.informatik.MiToBo.segmentation.snakes.optimize

Fields in de.unihalle.informatik.MiToBo.segmentation.snakes.optimize declared as MTBTableModel

Modifier and Type	Field and Description
protected MTBTableModel	SnakeOptimizer.energyData