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'''What is MiToBo?'''<br> | '''What is MiToBo?'''<br> | ||
The Microscope Image Analysis Toolbox MiToBo is a toolbox with a large collection of basic and advanced functions and algorithms for processing and analyzing digital images. Many tools in MiToBo target at the analysis of various kinds of microscopy data, however, most of the [[Features|functionality]] within MiToBo is generic. MiToBo is implemented as extension for the widely used image processing application [http://rsbweb.nih.gov/ij/ ImageJ] and its new release [http://developer.imagej.net/ ImageJ 2.0]. All functions, operators and plugins of MiToBo are ready to be used as plugins in ImageJ.<br /><br/> | The Microscope Image Analysis Toolbox MiToBo is a toolbox with a large collection of basic and advanced functions and algorithms for processing and analyzing digital images. Many tools in MiToBo target at the analysis of various kinds of microscopy data, however, most of the [[Features|functionality]] within MiToBo is generic. MiToBo is implemented as extension for the widely used image processing application [http://rsbweb.nih.gov/ij/ ImageJ]/[https://fiji.sc/ Fiji] and its new release [http://developer.imagej.net/ ImageJ 2.0]. All functions, operators and plugins of MiToBo are ready to be directly used as plugins in ImageJ and Fiji.<br /><br/> | ||
'''Highlight operators and tools in MiToBo''' | '''Highlight operators and tools in MiToBo''' | ||
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|style="text-align:left;width:80%|'''''Neuron Analyzer''''' for the segmentation of neurons in microscope images | |style="text-align:left;width:80%|'''''Neuron Analyzer''''' for the segmentation of neurons in microscope images | ||
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|style="text-align:left;width:10%|[[File: | |style="text-align:left;width:10%|[[File:Track-small.gif|64px|left|border|link=http://mitobo.informatik.uni-halle.de/index.php/Applications/CellMigrationAnalyzer]] | ||
|style="text-align:left;width:80%|'''''Cell Migration Analyzer''''' for analyzing single cell migration from time lapse image sequences | |style="text-align:left;width:80%|'''''Cell Migration Analyzer''''' for analyzing single cell migration from time lapse image sequences | ||
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MiToBo aims not only to support users in analyzing their images, but also targets at developers by offering a programmer-friendly software framework and API for developing new algorithms. | |||
The MiToBo API completely separates the implementation of image processing algorithms from potential user interfaces based | |||
on [http://www.informatik.uni-halle.de/alida/ Alida] which is a library for easing the development of data analysis | |||
MiToBo completely separates the implementation of image processing algorithms from potential user interfaces | algorithms and tools. The main concept of Alida are <i>operators</i> as the core units for implementing data analysis algorithms. <br /> | ||
algorithms and tools. | |||
Alida defines unified interfaces and execution procedures for operators which yield the fundament for its nice features like | Alida defines unified interfaces and execution procedures for operators which yield the fundament for its nice features like | ||
<ul> | <ul> | ||
<li> automatic documentation of complete analysis processes, e.g., leading from an input image to analysis results, in terms of processing graphs | <li> automatic documentation of complete analysis processes, e.g., leading from an input image to analysis results, in terms of processing graphs | ||
<li> automatic generation of commandline and graphical user interfaces | <li> automatic generation of commandline and graphical user interfaces | ||
<li> a graphical programming editor named '''''Grappa''''' automatically considering all implemented operators as potential processing nodes | <li> a graphical programming editor named '''''Grappa''''' automatically considering all implemented operators as potential processing nodes<br> | ||
</ul> | </ul> | ||
<p> | <p> | ||
MiToBo takes full advantage of Alida's features, hence, provides a framework for implementing image analysis algorithms allowing for automatic documentation and automatic user interface generation, and includes the graphical programming editor Grappa for user-friendly design of more complex processing pipelines. | MiToBo takes full advantage of Alida's features, hence, provides a framework for implementing image analysis algorithms allowing for automatic documentation and automatic user interface generation, and includes the graphical programming editor Grappa for user-friendly design of more complex processing pipelines. | ||
Revision as of 11:48, 21 December 2018
MiToBo - A microscope image analysis toolbox
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What is MiToBo? Highlight operators and tools in MiToBo
MiToBo aims not only to support users in analyzing their images, but also targets at developers by offering a programmer-friendly software framework and API for developing new algorithms.
The MiToBo API completely separates the implementation of image processing algorithms from potential user interfaces based
on Alida which is a library for easing the development of data analysis
algorithms and tools. The main concept of Alida are operators as the core units for implementing data analysis algorithms.
MiToBo takes full advantage of Alida's features, hence, provides a framework for implementing image analysis algorithms allowing for automatic documentation and automatic user interface generation, and includes the graphical programming editor Grappa for user-friendly design of more complex processing pipelines.
Visit MiToBo also at...
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How to get MiToBo?
You can find the API documentation for this release here.
Latest News
The news archive can be found here.
Licensing information
Gnu PGP Public Key
Bug reports & Feature requests |
