Applications: Difference between revisions

Revision as of 11:43, 1 November 2018

Several image processing pipelines have already been developed in MiToBo.
Below you can find selected example applications.

Cytoskeleton Analyzer 2D (since MiToBo 1.8.13)
is an advanced version of the Actin Analyzer 2D operator for quantifying and comparing structural patterns of the cytoskeleton in cells, e.g., of actin microfilament structures or microtubuli patterns.

PaCeQuant (released with MiToBo 1.8.6),
for quantifying pavement cell shape in a high-throughput manner

MTB Cell Counter (since MiToBo 1.5),
a tool for semi-automatic labeling and counting of spot-like structures like, e.g., plastides, stress granules or p-bodies

MiCA - MiToBo Cell Image Analyzer
for segmenting cell boundaries and sub-cellular particles in fluorescent microscopy images

Neuron Analyzer 2D
for segmenting the area of neurites and quantify protein concentrations within these neurites

Scratch Assay Analyzer
for analysis of collective cell migration based on scratch/ wound closure assay images

@@ Line 1: / Line 1: @@
 Several image processing pipelines have already been developed in MiToBo. <br/>
-Below you can find selected example applications, some of them have been published already.
+Below you can find selected example applications.
 * [http://mitobo.informatik.uni-halle.de/index.php/Applications/CytoskeletonAnalyzer2D Cytoskeleton Analyzer 2D] (since MiToBo 1.8.13) <br/> is an advanced version of the [[Applications/ActinAnalyzer2D | Actin Analyzer 2D]] operator for quantifying and comparing structural patterns of the cytoskeleton in cells, e.g., of actin microfilament structures or microtubuli patterns.