Applications/FeatureColorMapper: Difference between revisions
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==== Main features ==== | ==== Main features ==== | ||
* allows to map | * allows to map region features, for example cell features extracted by [[Applications/PaCeQuant|PaCeQuant]], in heatmap style to image regions | ||
* color map can be configured by the user in terms of colors used for minimal and maximal values | * the color map can be configured by the user in terms of colors used for minimal and maximal values | ||
* multiple features can be mapped in a single run | * multiple features can be mapped in a single plugin run | ||
* a range of valid region sizes can be | * a range of valid region sizes can be specified to exclude too small or too large regions from processing and mapping | ||
==== Usage - Parameters ==== | ==== Usage - Parameters ==== | ||
Revision as of 11:07, 13 February 2020
FeatureColorMapper Plugin
Short Description
The FeatureColorMapper allows to map feature values extracted for regions in an image onto corresponding label images for visualization.
The features values (like for example extracted by the PaCeQuant plugin) have to be provided as CSV files.
The mapper allows to select a set of features, and for each feature color maps with user-defined colors showing the overlay of region-specific feature values over the image regions are saved to disk.
Release Notes
The FeatureColorMapper is available in MiToBo since release version 1.8.17.
Related Publication
When using PaCeQuant, please cite us:
- B. Möller, M. Glaß, D. Misiak, and S. Posch, MiToBo - a toolbox for image processing and analysis. In Journal of Open Research Software, 4(1):e17, 2016.
Name of Plugin/Operator
de.unihalle.informatik.MiToBo.apps.cellMorphology.FeatureColorMapper
(available since MiToBo version 1.8.17)
Main features
- allows to map region features, for example cell features extracted by PaCeQuant, in heatmap style to image regions
- the color map can be configured by the user in terms of colors used for minimal and maximal values
- multiple features can be mapped in a single plugin run
- a range of valid region sizes can be specified to exclude too small or too large regions from processing and mapping
Usage - Parameters
To run the plugin perform the following steps:
- install MiToBo by following the instructions on the Installation page
- ...
Input Parameters
... coming soon
Output Parameters
... coming soon
Sample data
... coming soon
