Applications

Several image processing pipelines have already been developed in MiToBo.
Below you can find selected example applications, some of them have been published already.

• PaCeQuant (released with MiToBo 1.8.6),
  for quantifying pavement cell shape in a high-throughput manner

• MTB Cell Counter (since MiToBo 1.5),
  a tool for semi-automatic labeling and counting of spot-like structures like, e.g., plastides, stress granules or p-bodies

• MiCA - MiToBo Cell Image Analyzer
  for segmenting cell boundaries and sub-cellular particles in fluorescent microscopy images

• Neuron Analyzer 2D
  for segmenting the area of neurites and quantify protein concentrations within these neurites

• Scratch Assay Analyzer
  for analysis of collective cell migration based on scratch/ wound closure assay images

• Cell Migration Analyzer
  for migration analysis based on single cell tracking

• Actin Analyzer 2D (since MiToBo 1.4)
  for quantifying and comparing actin microfilament structures