de.unihalle.informatik.MiToBo.apps.nuclei2D

Class NucleusSeparator2DAlgos

java.lang.Object

de.unihalle.informatik.Alida.operator.ALDOperator

de.unihalle.informatik.MiToBo.core.operator.MTBOperator

de.unihalle.informatik.MiToBo.apps.nuclei2D.NucleusSeparator2DAlgos

All Implemented Interfaces:

de.unihalle.informatik.Alida.datatypes.ALDConfigurationValidator, de.unihalle.informatik.Alida.operator.events.ALDOperatorExecutionProgressEventListener, EventListener

Direct Known Subclasses:

NucleusSeparator2DBeamCut, NucleusSeparator2DPeakSearch

public abstract class NucleusSeparator2DAlgos
extends MTBOperator

Common super class for all nucleus separators.

This class is mainly used for enabling Alida/MiToBo operators to handle different nucleus separator algorithms in a generic fashion.

Author:

moeller

Nested Class Summary

Nested classes/interfaces inherited from class de.unihalle.informatik.Alida.operator.ALDOperator

de.unihalle.informatik.Alida.operator.ALDOperator.HidingMode, de.unihalle.informatik.Alida.operator.ALDOperator.HistoryConstructionMode

Field Summary

Fields

Modifier and Type	Field and Description
protected MTBImage	inputImg Input image to be processed.
protected MTBImage	labelImg Input image to process.
protected MTBImageShort	resultImg Result label image of separated nuclei.

Fields inherited from class de.unihalle.informatik.Alida.operator.ALDOperator

completeDAG, name, operatorExecutionEventlistenerList, portHashAccess, verbose, versionProvider

Constructor Summary

Constructors

Constructor and Description
NucleusSeparator2DAlgos() Empty constructor.

Method Summary

Modifier and Type	Method and Description
MTBImageShort	getResultImg() Get value of resultImg.
protected abstract void	operate()
void	setInputGrayScaleImage(MTBImage img) Specify input gray-scale image.
void	setInputLabelImage(MTBImage img) Specify label input image.
void	setResultImg(MTBImageShort value) Set value of resultImg.

Methods inherited from class de.unihalle.informatik.MiToBo.core.operator.MTBOperator

readResolve

Methods inherited from class de.unihalle.informatik.Alida.operator.ALDOperator

addOperatorExecutionProgressEventListener, addParameter, addParameter, addParameterUnconditioned, fieldContained, fireOperatorExecutionProgressEvent, getALDPortHashAccessKey, getConstructionMode, getDocumentation, getHidingMode, getInactiveParameterNames, getInInoutNames, getInInoutNames, getInNames, getInOutNames, getMissingRequiredInputs, getName, getNumParameters, getOutInoutNames, getOutNames, getParameter, getParameterDescriptor, getParameterDescriptorUnconditioned, getParameterNames, getParameterUnconditioned, getSupplementalNames, getVerbose, getVersion, handleOperatorExecutionProgressEvent, hasInOutParameters, hasParameter, isAnnotatedParameter, isConfigured, print, print, print, printInterface, printInterface, readHistory, reinitializeParameterDescriptors, removeOperatorExecutionProgressEventListener, removeParameter, runOp, runOp, runOp, setConstructionMode, setConstructionMode, setConstructionMode, setHidingMode, setName, setParameter, setParameterUnconditioned, setVerbose, toStringVerbose, unconfiguredItems, validate, validateCustom, validateGeneric, writeHistory, writeHistory, writeHistory

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

inputImg

@Parameter(label="Greyscale Input Image",
           required=true,
           direction=IN,
           dataIOOrder=-101,
           mode=STANDARD,
           description="Greyscale input image to be analyzed.")
protected transient MTBImage inputImg

Input image to be processed.

labelImg

@Parameter(label="Label input image",
           required=true,
           dataIOOrder=-100,
           direction=IN,
           description="Label input image of nuclei.")
protected transient MTBImage labelImg

Input image to process.

resultImg

@Parameter(label="Result image",
           direction=OUT,
           description="Label image of separated nuclei.")
protected transient MTBImageShort resultImg

Result label image of separated nuclei.

Constructor Detail

NucleusSeparator2DAlgos

public NucleusSeparator2DAlgos()
                        throws de.unihalle.informatik.Alida.exceptions.ALDOperatorException

Empty constructor.

Throws:

de.unihalle.informatik.Alida.exceptions.ALDOperatorException

Method Detail

getResultImg

public MTBImageShort getResultImg()

Get value of resultImg. Explanation: Label image of seprated nuclei.

Returns:

value of resultImg

setResultImg

public void setResultImg(MTBImageShort value)

Set value of resultImg. Explanation: Label image of seprated nuclei.

Parameters:

value - New value of resultImg

setInputLabelImage

public void setInputLabelImage(MTBImage img)

Specify label input image.

setInputGrayScaleImage

public void setInputGrayScaleImage(MTBImage img)

Specify input gray-scale image.

operate

protected abstract void operate()
                         throws de.unihalle.informatik.Alida.exceptions.ALDOperatorException,
                                de.unihalle.informatik.Alida.exceptions.ALDProcessingDAGException

Specified by:

operate in class de.unihalle.informatik.Alida.operator.ALDOperator

Throws:

de.unihalle.informatik.Alida.exceptions.ALDOperatorException

de.unihalle.informatik.Alida.exceptions.ALDProcessingDAGException