de.unihalle.informatik.MiToBo.core.operator

Class MTBOperator

java.lang.Object

de.unihalle.informatik.Alida.operator.ALDOperator

de.unihalle.informatik.MiToBo.core.operator.MTBOperator

All Implemented Interfaces:

de.unihalle.informatik.Alida.datatypes.ALDConfigurationValidator, de.unihalle.informatik.Alida.operator.events.ALDOperatorExecutionProgressEventListener, EventListener

Direct Known Subclasses:

ActinAnalyzer2D, ArealParameterExtractor, ArrayFilterDouble1D, ArrayToColorMapImage, BasicMorphology, BordersOnLabeledComponents, BoxWhiskerChartPlotter, CalcGlobalThreshOtsu, CalcQualityMeasures.PrecisionCalc, CalcQualityMeasures.RecallCalc, CalcSegmentationStatistics, CalcStructureStatistics, CellBoundaryExtractor2D, CellMigrationAnalyzer, CellSegmentationPostprocessing, CellSegmenter, CellTrackerBipartite, ComponentPostprocess, Contour2DConcavityCalculator, Contour2DCurvatureCalculator, ContourOnLabeledComponents, ConvexHullExtraction, CropImage, CytoskeletonAnalyzer2D, CytoskeletonFeatureExtractor, DataConverter, DetectMSERs, DijkstraShortestPixelPathFinder, DistanceTransform, DistinctColorListGenerator, DrawContour2DSet, DrawEllipse, DrawLine, DrawMask2D, DrawPolygon2DSet, DrawRegion2DSet, DrawStringToImage, DrawTracks2D, EvaluationMeasure, FeatureCalculator, FeatureColorMapper, FieldOperations2D, FillHoles2D, FitEllipseToPointSet, FitQuadraticCurveToPointSet, GammaCorrection2D, GaussFilter, GetMTBContour2DSetFromXSVFiles, GlobalContrastStretching, GradientFieldCalculator2D, GradientFieldNonMaxSuppression, GrayscaleImageToHeatmap, GrayscaleToGrayscaleMapping, GroundtruthEvaluation, GVFFieldCalculator2D, HDomeTransform3D, HistogramEqualization, HSIToRGBPixelConverter, HSVToRGBArrayConverter, HSVToRGBPixelConverter, HysteresisThresholding, IlluminationCorrection, ImageArithmetics, ImageContrastReducer, ImageConverter, ImageDimensionReducer, ImageReaderMTB, ImageStatistics, ImageToTilesSplitter, ImageValueTools, ImageWriterMTB, ImgClose, ImgDilate, ImgErode, ImgOpen, ImgThresh, ImgThreshNiblack, ImgTophat, KMeans, LabelComponentsSequential, LabelImageConverter, LabelImageEditor, LevelsetSegmentationNonPDE, LevelsetSolveNonPDE, LevelsetSolver, LinearFilter, LocallyAdaptiveContrastEnhancement, ManualTrackingMigrationAnalyzer, ManualTrackingTrajectoryExtraction, MatchingBipartite, MeanFilter, MedialnessMultiScaleFilter2D, MFFDOGFilter2D, MFFDOGMultiScaleFilter2D, MigrationAnalyzer, MorphologyAnalyzer2D, MorphologyAnalyzer3D, MPMFFilter2D, MTBImage.MTBImageFactory, MTBPlotHistogram, MTBRegion2DSet.RegionSelector, MTBSnake.SnakeCloner, MultiChannelParticleAnalyzer2D, MultiObservationTrackerRBMCDAIMM, NeuriteDetector2D, NeuriteExtractor2D, NeuriteMolProfExtractor2D, NeuriteParticleDetector2D, NeuronAnalyzer2D, NuclearParticleDetector2D, NucleusDetector2D, NucleusSeparator2D, NucleusSeparator2DAlgos, NucleusSeparator2DPeakSearch_RegionSeparator, OrientedFilter2D, OrientedFilter2DBatchAnalyzer, PaCeQuant, PaCeQuant.SkeletonPostprocessor, PCA, PlastidDetector2DParticlesUWT, PreprocessLabelImages, RankOperator, Region2DSetFromLabelimage, Region2DSkeletonAnalyzer, ReportGenerator, RGBToHSXConverter, RoiFileToCSVConverter, RoiManagerAdapter.RoiReader, RoiWriter, ScratchAssayAnalyzer, ScratchAssaySegmenter, ScratchAssaySVMTrainer, SegmentationInitializer, SkeletonExtractor, SkeletonPostprocessor, SnakeHelperOperators.ContourConverter, SnakeHelperOperators.ImageMaker, SnakeHelperOperators.MaskMaker, SnakeHelperOperators.RegionConverter, SnakeHelperOperators.RegionImageConverter, StackedBarChartPlotter, StatisticsFilter, StegerRidgeDetection2DWrapper, StromulesDetector2D, SurfaceExtraction, TexturalParameterExtractor, TileFeatureCalculator, TopHatContrastEnhancement, TrackEvaluator, WatershedBinary, XylemDetector, XylemGrower, XylemInitialSegmentation

public abstract class MTBOperator
extends de.unihalle.informatik.Alida.operator.ALDOperator

Abstract super class for all MiToBo operators.

Compared to its super class here specialized version providers and history database access mechanisms are configured. The port hash access object used here incorporates a special treatment of images not natively included in the Alida core.

Author:

posch

Nested Class Summary

Nested classes/interfaces inherited from class de.unihalle.informatik.Alida.operator.ALDOperator

de.unihalle.informatik.Alida.operator.ALDOperator.HidingMode, de.unihalle.informatik.Alida.operator.ALDOperator.HistoryConstructionMode

Field Summary

Fields inherited from class de.unihalle.informatik.Alida.operator.ALDOperator

completeDAG, name, operatorExecutionEventlistenerList, portHashAccess, verbose, versionProvider

Constructor Summary

Constructors

Modifier	Constructor and Description
protected	MTBOperator() Default constructor.

Method Summary

Modifier and Type	Method and Description
protected Object	readResolve() Init function for deserialized objects.

Methods inherited from class de.unihalle.informatik.Alida.operator.ALDOperator

addOperatorExecutionProgressEventListener, addParameter, addParameter, addParameterUnconditioned, fieldContained, fireOperatorExecutionProgressEvent, getALDPortHashAccessKey, getConstructionMode, getDocumentation, getHidingMode, getInactiveParameterNames, getInInoutNames, getInInoutNames, getInNames, getInOutNames, getMissingRequiredInputs, getName, getNumParameters, getOutInoutNames, getOutNames, getParameter, getParameterDescriptor, getParameterDescriptorUnconditioned, getParameterNames, getParameterUnconditioned, getSupplementalNames, getVerbose, getVersion, handleOperatorExecutionProgressEvent, hasInOutParameters, hasParameter, isAnnotatedParameter, isConfigured, operate, print, print, print, printInterface, printInterface, readHistory, reinitializeParameterDescriptors, removeOperatorExecutionProgressEventListener, removeParameter, runOp, runOp, runOp, setConstructionMode, setConstructionMode, setConstructionMode, setHidingMode, setName, setParameter, setParameterUnconditioned, setVerbose, toStringVerbose, unconfiguredItems, validate, validateCustom, validateGeneric, writeHistory, writeHistory, writeHistory

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MTBOperator

protected MTBOperator()
               throws de.unihalle.informatik.Alida.exceptions.ALDOperatorException

Default constructor.

Throws:

de.unihalle.informatik.Alida.exceptions.ALDOperatorException

Method Detail

readResolve

protected Object readResolve()

Init function for deserialized objects.

This function is called on an instance of this class being deserialized from file, prior to handing the instance over to the user. It takes care of a proper initialization of transient member variables as they are not initialized to the default values during deserialization.

Overrides:

readResolve in class de.unihalle.informatik.Alida.operator.ALDOperator

Returns:

Updated deserialized object.