de.unihalle.informatik.MiToBo.apps.singleCellTracking2D

Class ManualTrackingMigrationAnalyzer

java.lang.Object

de.unihalle.informatik.Alida.operator.ALDOperator

de.unihalle.informatik.MiToBo.core.operator.MTBOperator

de.unihalle.informatik.MiToBo.apps.singleCellTracking2D.ManualTrackingMigrationAnalyzer

All Implemented Interfaces:

de.unihalle.informatik.Alida.datatypes.ALDConfigurationValidator, de.unihalle.informatik.Alida.operator.events.ALDOperatorExecutionProgressEventListener, EventListener

@ALDAOperator(genericExecutionMode=ALL,
              level=STANDARD,
              shortDescription="Migration analyzer based on manual tracking.")
public class ManualTrackingMigrationAnalyzer
extends MTBOperator

Nested Class Summary

Nested classes/interfaces inherited from class de.unihalle.informatik.Alida.operator.ALDOperator

de.unihalle.informatik.Alida.operator.ALDOperator.HidingMode, de.unihalle.informatik.Alida.operator.ALDOperator.HistoryConstructionMode

Field Summary

Fields

Modifier and Type	Field and Description
private double	deltaT
private double	deltaX
private double	deltaY
private int	minTrackLength
private de.unihalle.informatik.Alida.datatypes.ALDFileString	path
private String	unitT
private String	unitXY

Fields inherited from class de.unihalle.informatik.Alida.operator.ALDOperator

completeDAG, name, operatorExecutionEventlistenerList, portHashAccess, verbose, versionProvider

Constructor Summary

Constructors

Constructor and Description
ManualTrackingMigrationAnalyzer()
ManualTrackingMigrationAnalyzer(String path)

Method Summary

Modifier and Type	Method and Description
String	getDocumentation()
void	operate()

Methods inherited from class de.unihalle.informatik.MiToBo.core.operator.MTBOperator

readResolve

Methods inherited from class de.unihalle.informatik.Alida.operator.ALDOperator

addOperatorExecutionProgressEventListener, addParameter, addParameter, addParameterUnconditioned, fieldContained, fireOperatorExecutionProgressEvent, getALDPortHashAccessKey, getConstructionMode, getHidingMode, getInactiveParameterNames, getInInoutNames, getInInoutNames, getInNames, getInOutNames, getMissingRequiredInputs, getName, getNumParameters, getOutInoutNames, getOutNames, getParameter, getParameterDescriptor, getParameterDescriptorUnconditioned, getParameterNames, getParameterUnconditioned, getSupplementalNames, getVerbose, getVersion, handleOperatorExecutionProgressEvent, hasInOutParameters, hasParameter, isAnnotatedParameter, isConfigured, print, print, print, printInterface, printInterface, readHistory, reinitializeParameterDescriptors, removeOperatorExecutionProgressEventListener, removeParameter, runOp, runOp, runOp, setConstructionMode, setConstructionMode, setConstructionMode, setHidingMode, setName, setParameter, setParameterUnconditioned, setVerbose, toStringVerbose, unconfiguredItems, validate, validateCustom, validateGeneric, writeHistory, writeHistory, writeHistory

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

path

@Parameter(label="path",
           required=true,
           direction=IN,
           supplemental=false,
           description="path to file containing data from the ManualTracking plugin",
           dataIOOrder=0)
private de.unihalle.informatik.Alida.datatypes.ALDFileString path

deltaX

@Parameter(label="pixel length, x-direction",
           required=false,
           direction=IN,
           supplemental=false,
           description="pixel length in x-direction",
           dataIOOrder=1)
private double deltaX

deltaY

@Parameter(label="pixel length, y-direction",
           required=false,
           direction=IN,
           supplemental=false,
           description="pixel length in y-direction",
           dataIOOrder=2)
private double deltaY

unitXY

@Parameter(label="unit space",
           required=false,
           direction=IN,
           supplemental=false,
           description="unit of space",
           dataIOOrder=3)
private String unitXY

deltaT

@Parameter(label="time between frames",
           required=false,
           direction=IN,
           supplemental=false,
           description="time between frames",
           dataIOOrder=4)
private double deltaT

unitT

@Parameter(label="unit time",
           required=false,
           direction=IN,
           supplemental=false,
           description="unit of time",
           dataIOOrder=5)
private String unitT

minTrackLength

@Parameter(label="minimum track length",
           required=false,
           direction=IN,
           supplemental=false,
           description="minimum track length to be considered",
           dataIOOrder=6)
private int minTrackLength

Constructor Detail

ManualTrackingMigrationAnalyzer

public ManualTrackingMigrationAnalyzer()
                                throws de.unihalle.informatik.Alida.exceptions.ALDOperatorException

Throws:

de.unihalle.informatik.Alida.exceptions.ALDOperatorException

ManualTrackingMigrationAnalyzer

public ManualTrackingMigrationAnalyzer(String path)
                                throws de.unihalle.informatik.Alida.exceptions.ALDOperatorException

Throws:

de.unihalle.informatik.Alida.exceptions.ALDOperatorException

Method Detail

operate

public void operate()
             throws de.unihalle.informatik.Alida.exceptions.ALDOperatorException,
                    de.unihalle.informatik.Alida.exceptions.ALDProcessingDAGException

Specified by:

operate in class de.unihalle.informatik.Alida.operator.ALDOperator

Throws:

de.unihalle.informatik.Alida.exceptions.ALDOperatorException

de.unihalle.informatik.Alida.exceptions.ALDProcessingDAGException

getDocumentation

public String getDocumentation()

Overrides:

getDocumentation in class de.unihalle.informatik.Alida.operator.ALDOperator