de.unihalle.informatik.MiToBo.apps.singleCellTracking2D

Class ManualTrackingTrajectoryExtraction

java.lang.Object

de.unihalle.informatik.Alida.operator.ALDOperator

de.unihalle.informatik.MiToBo.core.operator.MTBOperator

de.unihalle.informatik.MiToBo.apps.singleCellTracking2D.ManualTrackingTrajectoryExtraction

All Implemented Interfaces:

de.unihalle.informatik.Alida.datatypes.ALDConfigurationValidator, de.unihalle.informatik.Alida.operator.events.ALDOperatorExecutionProgressEventListener, EventListener

public class ManualTrackingTrajectoryExtraction
extends MTBOperator

Nested Class Summary

Nested classes/interfaces inherited from class de.unihalle.informatik.Alida.operator.ALDOperator

de.unihalle.informatik.Alida.operator.ALDOperator.HidingMode, de.unihalle.informatik.Alida.operator.ALDOperator.HistoryConstructionMode

Field Summary

Fields

Modifier and Type	Field and Description
private int	minTrackLength
private de.unihalle.informatik.Alida.datatypes.ALDFileString	path
private Vector<Trajectory2D>	trajectories

Fields inherited from class de.unihalle.informatik.Alida.operator.ALDOperator

completeDAG, name, operatorExecutionEventlistenerList, portHashAccess, verbose, versionProvider

Constructor Summary

Constructors

Modifier	Constructor and Description
protected	ManualTrackingTrajectoryExtraction(String path, int minTrackLength)

Method Summary

Modifier and Type	Method and Description
private void	discardShortTracks() delete trajectories whose length is too short
Vector<Trajectory2D>	getTrajectories()
protected void	operate()

Methods inherited from class de.unihalle.informatik.MiToBo.core.operator.MTBOperator

readResolve

Methods inherited from class de.unihalle.informatik.Alida.operator.ALDOperator

addOperatorExecutionProgressEventListener, addParameter, addParameter, addParameterUnconditioned, fieldContained, fireOperatorExecutionProgressEvent, getALDPortHashAccessKey, getConstructionMode, getDocumentation, getHidingMode, getInactiveParameterNames, getInInoutNames, getInInoutNames, getInNames, getInOutNames, getMissingRequiredInputs, getName, getNumParameters, getOutInoutNames, getOutNames, getParameter, getParameterDescriptor, getParameterDescriptorUnconditioned, getParameterNames, getParameterUnconditioned, getSupplementalNames, getVerbose, getVersion, handleOperatorExecutionProgressEvent, hasInOutParameters, hasParameter, isAnnotatedParameter, isConfigured, print, print, print, printInterface, printInterface, readHistory, reinitializeParameterDescriptors, removeOperatorExecutionProgressEventListener, removeParameter, runOp, runOp, runOp, setConstructionMode, setConstructionMode, setConstructionMode, setHidingMode, setName, setParameter, setParameterUnconditioned, setVerbose, toStringVerbose, unconfiguredItems, validate, validateCustom, validateGeneric, writeHistory, writeHistory, writeHistory

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

path

@Parameter(label="path",
           required=true,
           direction=IN,
           supplemental=false,
           description="path to file containing the data from ManualTracking plugin",
           dataIOOrder=0)
private de.unihalle.informatik.Alida.datatypes.ALDFileString path

trajectories

@Parameter(label="trajectories",
           required=true,
           direction=OUT,
           supplemental=false,
           description="extracted trajectories",
           dataIOOrder=0)
private Vector<Trajectory2D> trajectories

minTrackLength

private int minTrackLength

Constructor Detail

ManualTrackingTrajectoryExtraction

protected ManualTrackingTrajectoryExtraction(String path,
                                             int minTrackLength)
                                      throws de.unihalle.informatik.Alida.exceptions.ALDOperatorException

Throws:

de.unihalle.informatik.Alida.exceptions.ALDOperatorException

Method Detail

operate

protected void operate()
                throws de.unihalle.informatik.Alida.exceptions.ALDOperatorException,
                       de.unihalle.informatik.Alida.exceptions.ALDProcessingDAGException

Specified by:

operate in class de.unihalle.informatik.Alida.operator.ALDOperator

Throws:

de.unihalle.informatik.Alida.exceptions.ALDOperatorException

de.unihalle.informatik.Alida.exceptions.ALDProcessingDAGException

discardShortTracks

private void discardShortTracks()

delete trajectories whose length is too short

getTrajectories

public Vector<Trajectory2D> getTrajectories()