de.unihalle.informatik.MiToBo.apps.plantCells.plastids

Class PlastidDetector2DParticlesUWT

java.lang.Object

de.unihalle.informatik.Alida.operator.ALDOperator

de.unihalle.informatik.MiToBo.core.operator.MTBOperator

de.unihalle.informatik.MiToBo.apps.plantCells.plastids.PlastidDetector2DParticlesUWT

All Implemented Interfaces:

de.unihalle.informatik.Alida.datatypes.ALDConfigurationValidator, de.unihalle.informatik.Alida.operator.events.ALDOperatorExecutionProgressEventListener, EventListener

@ALDAOperator(genericExecutionMode=ALL,
              level=APPLICATION,
              allowBatchMode=true)
public class PlastidDetector2DParticlesUWT
extends MTBOperator

Operator to detect plastid regions in 2D microscope images.

Author:

Julian Wendland, Birgit Moeller

Nested Class Summary

Nested classes/interfaces inherited from class de.unihalle.informatik.Alida.operator.ALDOperator

de.unihalle.informatik.Alida.operator.ALDOperator.HidingMode, de.unihalle.informatik.Alida.operator.ALDOperator.HistoryConstructionMode

Field Summary

Fields

Modifier and Type	Field and Description
private MTBImage	inImg Gray-scale input image.
protected ParticleDetectorUWT2D	particleOp Particle detector object.
private MTBRegion2DSet	plastidRegions Set of detected plastid regions with stromuli.
private MTBImageShort	resultLabelImage Label image of detected plastid regions with stromuli.

Fields inherited from class de.unihalle.informatik.Alida.operator.ALDOperator

completeDAG, name, operatorExecutionEventlistenerList, portHashAccess, verbose, versionProvider

Constructor Summary

Constructors

Constructor and Description
PlastidDetector2DParticlesUWT() Default constructor.

Method Summary

Modifier and Type	Method and Description
MTBRegion2DSet	getPlastidRegions() Access detected plastid regions.
protected void	operate()
void	setDetector(ParticleDetectorUWT2D pd) Specify particle detector to apply.
void	setInputImage(MTBImage image) Specify input image to process.

Methods inherited from class de.unihalle.informatik.MiToBo.core.operator.MTBOperator

readResolve

Methods inherited from class de.unihalle.informatik.Alida.operator.ALDOperator

addOperatorExecutionProgressEventListener, addParameter, addParameter, addParameterUnconditioned, fieldContained, fireOperatorExecutionProgressEvent, getALDPortHashAccessKey, getConstructionMode, getDocumentation, getHidingMode, getInactiveParameterNames, getInInoutNames, getInInoutNames, getInNames, getInOutNames, getMissingRequiredInputs, getName, getNumParameters, getOutInoutNames, getOutNames, getParameter, getParameterDescriptor, getParameterDescriptorUnconditioned, getParameterNames, getParameterUnconditioned, getSupplementalNames, getVerbose, getVersion, handleOperatorExecutionProgressEvent, hasInOutParameters, hasParameter, isAnnotatedParameter, isConfigured, print, print, print, printInterface, printInterface, readHistory, reinitializeParameterDescriptors, removeOperatorExecutionProgressEventListener, removeParameter, runOp, runOp, runOp, setConstructionMode, setConstructionMode, setConstructionMode, setHidingMode, setName, setParameter, setParameterUnconditioned, setVerbose, toStringVerbose, unconfiguredItems, validate, validateCustom, validateGeneric, writeHistory, writeHistory, writeHistory

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

inImg

@Parameter(label="Input Image",
           required=true,
           dataIOOrder=0,
           direction=IN,
           description="Input image.")
private MTBImage inImg

Gray-scale input image.

particleOp

@Parameter(label="Particle detector",
           required=false,
           direction=IN,
           mode=STANDARD,
           dataIOOrder=2,
           description="Detector.")
protected ParticleDetectorUWT2D particleOp

Particle detector object.

plastidRegions

@Parameter(label="Plastid Regions",
           dataIOOrder=1,
           direction=OUT,
           description="Resulting plastid region set.")
private MTBRegion2DSet plastidRegions

Set of detected plastid regions with stromuli.

resultLabelImage

@Parameter(label="Result Label Image",
           dataIOOrder=2,
           direction=OUT,
           description="Label image of detected plastids with stromuli.")
private MTBImageShort resultLabelImage

Label image of detected plastid regions with stromuli.

Constructor Detail

PlastidDetector2DParticlesUWT

public PlastidDetector2DParticlesUWT()
                              throws de.unihalle.informatik.Alida.exceptions.ALDOperatorException

Default constructor.

Throws:

de.unihalle.informatik.Alida.exceptions.ALDOperatorException - Thrown in case of operate failure.

Method Detail

operate

protected void operate()
                throws de.unihalle.informatik.Alida.exceptions.ALDOperatorException,
                       de.unihalle.informatik.Alida.exceptions.ALDProcessingDAGException

Specified by:

operate in class de.unihalle.informatik.Alida.operator.ALDOperator

Throws:

de.unihalle.informatik.Alida.exceptions.ALDOperatorException

de.unihalle.informatik.Alida.exceptions.ALDProcessingDAGException

setInputImage

public void setInputImage(MTBImage image)

Specify input image to process.

Parameters:

image - Image to process.

setDetector

public void setDetector(ParticleDetectorUWT2D pd)

Specify particle detector to apply.

Parameters:

pd - Particle detector object.

getPlastidRegions

public MTBRegion2DSet getPlastidRegions()

Access detected plastid regions.

Returns:

Set of detected plastid regions.