de.unihalle.informatik.MiToBo.segmentation.regions.convert

Class Region2DSetFromLabelimage

java.lang.Object

de.unihalle.informatik.Alida.operator.ALDOperator

de.unihalle.informatik.MiToBo.core.operator.MTBOperator

de.unihalle.informatik.MiToBo.segmentation.regions.convert.Region2DSetFromLabelimage

All Implemented Interfaces:

de.unihalle.informatik.Alida.datatypes.ALDConfigurationValidator, de.unihalle.informatik.Alida.operator.events.ALDOperatorExecutionProgressEventListener, EventListener, loci.common.StatusReporter

@ALDAOperator(genericExecutionMode=ALL,
              level=STANDARD)
public class Region2DSetFromLabelimage
extends MTBOperator
implements loci.common.StatusReporter

Operator to convert 2D label image to a MTBRegionsSet2D.

Author:

posch

Nested Class Summary

Nested classes/interfaces inherited from class de.unihalle.informatik.Alida.operator.ALDOperator

de.unihalle.informatik.Alida.operator.ALDOperator.HidingMode, de.unihalle.informatik.Alida.operator.ALDOperator.HistoryConstructionMode

Field Summary

Fields

Modifier and Type	Field and Description
private int	backgroundLabel
private boolean	excludeBackground If true all background pixels, defined as pixels with label equals backgroundLabel are excluded
private MTBImage	labelImage Input image.
private Vector<loci.common.StatusListener>	m_statusListeners vector of installed StatusListeners
private MTBRegion2DSet	regionSet Resulting region set.

Fields inherited from class de.unihalle.informatik.Alida.operator.ALDOperator

completeDAG, name, operatorExecutionEventlistenerList, portHashAccess, verbose, versionProvider

Constructor Summary

Constructors

Constructor and Description
Region2DSetFromLabelimage() Default constructor.

Method Summary

Modifier and Type	Method and Description
void	addStatusListener(loci.common.StatusListener statuslistener)
MTBImage	getLabelImage() Get reference to the current Label image.
MTBRegion2DSet	getRegionSet()
void	notifyListeners(loci.common.StatusEvent e)
protected void	operate()
protected Object	readResolve() Init function for deserialized objects.
void	removeStatusListener(loci.common.StatusListener statuslistener)
void	setLabelImage(MTBImage labelImage) Set Label image.
void	validateCustom()

Methods inherited from class de.unihalle.informatik.Alida.operator.ALDOperator

addOperatorExecutionProgressEventListener, addParameter, addParameter, addParameterUnconditioned, fieldContained, fireOperatorExecutionProgressEvent, getALDPortHashAccessKey, getConstructionMode, getDocumentation, getHidingMode, getInactiveParameterNames, getInInoutNames, getInInoutNames, getInNames, getInOutNames, getMissingRequiredInputs, getName, getNumParameters, getOutInoutNames, getOutNames, getParameter, getParameterDescriptor, getParameterDescriptorUnconditioned, getParameterNames, getParameterUnconditioned, getSupplementalNames, getVerbose, getVersion, handleOperatorExecutionProgressEvent, hasInOutParameters, hasParameter, isAnnotatedParameter, isConfigured, print, print, print, printInterface, printInterface, readHistory, reinitializeParameterDescriptors, removeOperatorExecutionProgressEventListener, removeParameter, runOp, runOp, runOp, setConstructionMode, setConstructionMode, setConstructionMode, setHidingMode, setName, setParameter, setParameterUnconditioned, setVerbose, toStringVerbose, unconfiguredItems, validate, validateGeneric, writeHistory, writeHistory, writeHistory

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

labelImage

@Parameter(label="Label image",
           required=true,
           direction=IN,
           mode=STANDARD,
           dataIOOrder=1,
           description="Label image")
private transient MTBImage labelImage

Input image.

excludeBackground

@Parameter(label="ExcludeBackground",
           required=true,
           direction=IN,
           mode=STANDARD,
           dataIOOrder=2,
           description="Exclude background region?")
private boolean excludeBackground

If true all background pixels, defined as pixels with label equals backgroundLabel are excluded

backgroundLabel

@Parameter(label="BackgroundLabel",
           required=true,
           direction=IN,
           mode=STANDARD,
           dataIOOrder=3,
           description="Label of background pixels")
private int backgroundLabel

regionSet

@Parameter(label="Regionset",
           required=true,
           direction=OUT,
           mode=STANDARD,
           dataIOOrder=1,
           description="Region set from label image")
private transient MTBRegion2DSet regionSet

Resulting region set.

m_statusListeners

private transient Vector<loci.common.StatusListener> m_statusListeners

vector of installed StatusListeners

Constructor Detail

Region2DSetFromLabelimage

public Region2DSetFromLabelimage()
                          throws de.unihalle.informatik.Alida.exceptions.ALDOperatorException

Default constructor.

Throws:

de.unihalle.informatik.Alida.exceptions.ALDOperatorException

Method Detail

validateCustom

public void validateCustom()
                    throws de.unihalle.informatik.Alida.exceptions.ALDOperatorException

Overrides:

validateCustom in class de.unihalle.informatik.Alida.operator.ALDOperator

Throws:

de.unihalle.informatik.Alida.exceptions.ALDOperatorException

readResolve

protected Object readResolve()

Init function for deserialized objects.

This function is called on an instance of this class being deserialized from file, prior to handing the instance over to the user. It takes care of a proper initialization of transient member variables as they are not initialized to the default values during deserialization.

Overrides:

readResolve in class MTBOperator

Returns:

getLabelImage

public MTBImage getLabelImage()

Get reference to the current Label image.

setLabelImage

public void setLabelImage(MTBImage labelImage)

Set Label image.

getRegionSet

public MTBRegion2DSet getRegionSet()

Returns:

the regionSet

operate

protected void operate()

Specified by:

operate in class de.unihalle.informatik.Alida.operator.ALDOperator

addStatusListener

public void addStatusListener(loci.common.StatusListener statuslistener)

Specified by:

addStatusListener in interface loci.common.StatusReporter

notifyListeners

public void notifyListeners(loci.common.StatusEvent e)

Specified by:

notifyListeners in interface loci.common.StatusReporter

removeStatusListener

public void removeStatusListener(loci.common.StatusListener statuslistener)

Specified by:

removeStatusListener in interface loci.common.StatusReporter