de.unihalle.informatik.MiToBo.visualization.drawing

Class DrawTracks2D

java.lang.Object

de.unihalle.informatik.Alida.operator.ALDOperator

de.unihalle.informatik.MiToBo.core.operator.MTBOperator

de.unihalle.informatik.MiToBo.visualization.drawing.DrawTracks2D

All Implemented Interfaces:

de.unihalle.informatik.Alida.datatypes.ALDConfigurationValidator, de.unihalle.informatik.Alida.operator.events.ALDOperatorExecutionProgressEventListener, EventListener

@ALDAOperator(genericExecutionMode=NONE,
              level=STANDARD)
public class DrawTracks2D
extends MTBOperator

Draw trajectories of tracked observations over time.

Author:

Oliver Gress

Nested Class Summary

Nested classes/interfaces inherited from class de.unihalle.informatik.Alida.operator.ALDOperator

de.unihalle.informatik.Alida.operator.ALDOperator.HidingMode, de.unihalle.informatik.Alida.operator.ALDOperator.HistoryConstructionMode

Field Summary

Fields

Modifier and Type	Field and Description
MTBRegion2DSetBag	detectedRegions
boolean	drawSpots
boolean	drawTrajectories
MTBImage	inputImage
Vector<MultiState<MotionModelID>>	observations
DynamicColorLUT	trackcolors
Vector<MTBGraph>	trackgraphs
protected MTBImage	trackImage

Fields inherited from class de.unihalle.informatik.Alida.operator.ALDOperator

completeDAG, name, operatorExecutionEventlistenerList, portHashAccess, verbose, versionProvider

Constructor Summary

Constructors

Constructor and Description
DrawTracks2D() Constructor.

Method Summary

Modifier and Type	Method and Description
protected void	drawSpot(MTBImage img, MTBRegion2D reg, int t, int c, int color) Draw region to an image at time=t and channel=c with specified color.
protected void	drawSqare(MTBImage img, MTBRegion2D reg, int t, int c, int color, int radius) Draw square to an image at time=t and channel=c with specified color and size=2*radius+1.
protected void	drawTrajectories(Jama.Matrix oldP, Jama.Matrix newP, int t, int t_last, int c, MTBImage img, int color) Draw trajectory between two points at the given and all later timepoints until t_last
MTBImage	getTrackImage()
protected void	operate()
void	validateCustom()

Methods inherited from class de.unihalle.informatik.MiToBo.core.operator.MTBOperator

readResolve

Methods inherited from class de.unihalle.informatik.Alida.operator.ALDOperator

addOperatorExecutionProgressEventListener, addParameter, addParameter, addParameterUnconditioned, fieldContained, fireOperatorExecutionProgressEvent, getALDPortHashAccessKey, getConstructionMode, getDocumentation, getHidingMode, getInactiveParameterNames, getInInoutNames, getInInoutNames, getInNames, getInOutNames, getMissingRequiredInputs, getName, getNumParameters, getOutInoutNames, getOutNames, getParameter, getParameterDescriptor, getParameterDescriptorUnconditioned, getParameterNames, getParameterUnconditioned, getSupplementalNames, getVerbose, getVersion, handleOperatorExecutionProgressEvent, hasInOutParameters, hasParameter, isAnnotatedParameter, isConfigured, print, print, print, printInterface, printInterface, readHistory, reinitializeParameterDescriptors, removeOperatorExecutionProgressEventListener, removeParameter, runOp, runOp, runOp, setConstructionMode, setConstructionMode, setConstructionMode, setHidingMode, setName, setParameter, setParameterUnconditioned, setVerbose, toStringVerbose, unconfiguredItems, validate, validateGeneric, writeHistory, writeHistory, writeHistory

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

inputImage

@Parameter(label="Input image",
           direction=IN,
           required=true,
           dataIOOrder=1,
           mode=STANDARD,
           description="Image used for drawing tracks")
public MTBImage inputImage

detectedRegions

@Parameter(label="Detected regions",
           direction=IN,
           required=false,
           dataIOOrder=2,
           mode=STANDARD,
           description="Detected regions whose IDs determine target association")
public MTBRegion2DSetBag detectedRegions

observations

@Parameter(label="Observations",
           direction=IN,
           required=false,
           dataIOOrder=3,
           mode=STANDARD,
           description="Observations whose IDs determine target association")
public Vector<MultiState<MotionModelID>> observations

trackgraphs

@Parameter(label="Track graphs",
           direction=IN,
           required=false,
           dataIOOrder=4,
           mode=STANDARD,
           description="Graphs that determine target association. If specified IDs in observations or detected regions are ignored.")
public Vector<MTBGraph> trackgraphs

trackcolors

@Parameter(label="Track colors",
           direction=IN,
           required=false,
           dataIOOrder=7,
           mode=STANDARD,
           description="Color lookup table of track colors")
public DynamicColorLUT trackcolors

trackImage

@Parameter(label="Track image",
           direction=OUT,
           required=false,
           dataIOOrder=1,
           mode=STANDARD,
           description="Image with tracks drawn")
protected MTBImage trackImage

drawTrajectories

@Parameter(label="Draw trajectories",
           direction=IN,
           required=true,
           dataIOOrder=5,
           mode=STANDARD,
           description="Flag to draw trajectories")
public boolean drawTrajectories

drawSpots

@Parameter(label="Draw spots",
           direction=IN,
           required=true,
           dataIOOrder=6,
           mode=STANDARD,
           description="Flag to draw spots (otherwise squares indicate target location)")
public boolean drawSpots

Constructor Detail

DrawTracks2D

public DrawTracks2D()
             throws de.unihalle.informatik.Alida.exceptions.ALDOperatorException

Constructor.

Throws:

de.unihalle.informatik.Alida.exceptions.ALDOperatorException

Method Detail

validateCustom

public void validateCustom()
                    throws de.unihalle.informatik.Alida.exceptions.ALDOperatorException

Overrides:

validateCustom in class de.unihalle.informatik.Alida.operator.ALDOperator

Throws:

de.unihalle.informatik.Alida.exceptions.ALDOperatorException

operate

protected void operate()
                throws de.unihalle.informatik.Alida.exceptions.ALDOperatorException,
                       de.unihalle.informatik.Alida.exceptions.ALDProcessingDAGException

Specified by:

operate in class de.unihalle.informatik.Alida.operator.ALDOperator

Throws:

de.unihalle.informatik.Alida.exceptions.ALDOperatorException

de.unihalle.informatik.Alida.exceptions.ALDProcessingDAGException

getTrackImage

public MTBImage getTrackImage()

drawSqare

protected void drawSqare(MTBImage img,
                         MTBRegion2D reg,
                         int t,
                         int c,
                         int color,
                         int radius)

Draw square to an image at time=t and channel=c with specified color and size=2*radius+1.

drawSpot

protected void drawSpot(MTBImage img,
                        MTBRegion2D reg,
                        int t,
                        int c,
                        int color)

Draw region to an image at time=t and channel=c with specified color.

drawTrajectories

protected void drawTrajectories(Jama.Matrix oldP,
                                Jama.Matrix newP,
                                int t,
                                int t_last,
                                int c,
                                MTBImage img,
                                int color)

Draw trajectory between two points at the given and all later timepoints until t_last