de.unihalle.informatik.MiToBo.segmentation.evaluation.measures

Class Measure_RecallPrecisionF

java.lang.Object

de.unihalle.informatik.Alida.operator.ALDOperator

de.unihalle.informatik.MiToBo.core.operator.MTBOperator

de.unihalle.informatik.MiToBo.segmentation.evaluation.measures.EvaluationMeasure

de.unihalle.informatik.MiToBo.segmentation.evaluation.measures.Measure_RecallPrecisionF

All Implemented Interfaces:

de.unihalle.informatik.Alida.datatypes.ALDConfigurationValidator, de.unihalle.informatik.Alida.operator.events.ALDOperatorExecutionProgressEventListener, EventListener

public class Measure_RecallPrecisionF
extends EvaluationMeasure

Class for evaluating recalls, precisions, F1-scores and Jaccard indices.

Author:

moeller

Nested Class Summary

Nested classes/interfaces inherited from class de.unihalle.informatik.Alida.operator.ALDOperator

de.unihalle.informatik.Alida.operator.ALDOperator.HidingMode, de.unihalle.informatik.Alida.operator.ALDOperator.HistoryConstructionMode

Field Summary

Fields inherited from class de.unihalle.informatik.MiToBo.segmentation.evaluation.measures.EvaluationMeasure

evalData, gtIDs, gtLabelImage, height, labelsetGT, labelsetSG, matchingMatrix, maxRegionCount, minRegionCount, scoreMatrix, segLabelImage, sgIDs, sizesGT, sizesSG, width

Fields inherited from class de.unihalle.informatik.Alida.operator.ALDOperator

completeDAG, name, operatorExecutionEventlistenerList, portHashAccess, verbose, versionProvider

Constructor Summary

Constructors

Constructor and Description
Measure_RecallPrecisionF() Default constructor.
Measure_RecallPrecisionF(MTBImageShort _segLabels, MTBImageShort _gtLabels, TreeSet<Integer> _labelsetSG, TreeSet<Integer> _labelsetGT, int[] _gtIDs, int[] _sgIDs, HashMap<Integer,Integer> _sizesGT, HashMap<Integer,Integer> _sizesSG, int _minRegionCount, int _maxRegionCount, double[][] _scoreMatrix, byte[][] _matchingMatrix) Default constructor with parameters.

Method Summary

Modifier and Type	Method and Description
protected void	doEvaluation() Method to overwrite that does actual calculations.

Methods inherited from class de.unihalle.informatik.MiToBo.segmentation.evaluation.measures.EvaluationMeasure

getResult, operate

Methods inherited from class de.unihalle.informatik.MiToBo.core.operator.MTBOperator

readResolve

Methods inherited from class de.unihalle.informatik.Alida.operator.ALDOperator

addOperatorExecutionProgressEventListener, addParameter, addParameter, addParameterUnconditioned, fieldContained, fireOperatorExecutionProgressEvent, getALDPortHashAccessKey, getConstructionMode, getDocumentation, getHidingMode, getInactiveParameterNames, getInInoutNames, getInInoutNames, getInNames, getInOutNames, getMissingRequiredInputs, getName, getNumParameters, getOutInoutNames, getOutNames, getParameter, getParameterDescriptor, getParameterDescriptorUnconditioned, getParameterNames, getParameterUnconditioned, getSupplementalNames, getVerbose, getVersion, handleOperatorExecutionProgressEvent, hasInOutParameters, hasParameter, isAnnotatedParameter, isConfigured, print, print, print, printInterface, printInterface, readHistory, reinitializeParameterDescriptors, removeOperatorExecutionProgressEventListener, removeParameter, runOp, runOp, runOp, setConstructionMode, setConstructionMode, setConstructionMode, setHidingMode, setName, setParameter, setParameterUnconditioned, setVerbose, toStringVerbose, unconfiguredItems, validate, validateCustom, validateGeneric, writeHistory, writeHistory, writeHistory

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Measure_RecallPrecisionF

public Measure_RecallPrecisionF()
                         throws de.unihalle.informatik.Alida.exceptions.ALDOperatorException

Default constructor.

Throws:

de.unihalle.informatik.Alida.exceptions.ALDOperatorException - Thrown in case of failure.

Measure_RecallPrecisionF

public Measure_RecallPrecisionF(MTBImageShort _segLabels,
                                MTBImageShort _gtLabels,
                                TreeSet<Integer> _labelsetSG,
                                TreeSet<Integer> _labelsetGT,
                                int[] _gtIDs,
                                int[] _sgIDs,
                                HashMap<Integer,Integer> _sizesGT,
                                HashMap<Integer,Integer> _sizesSG,
                                int _minRegionCount,
                                int _maxRegionCount,
                                double[][] _scoreMatrix,
                                byte[][] _matchingMatrix)
                         throws de.unihalle.informatik.Alida.exceptions.ALDOperatorException

Default constructor with parameters.

Parameters:

_segLabels - Label image of segmentation result.

_gtLabels - Label image of groundtruth segmentation.

_labelsetSG - Set of labels in segmentation image.

_labelsetGT - Set of labels in groundtruth image.

_gtIDs - Match list of set entries to groundtruth labels.

_sgIDs - Match list of set entries to segmentation labels.

_sizesGT - Region sizes in groundtruth image indexed by label.

_sizesSG - Region sizes in segmentation image indexed by label.

_minRegionCount - Minimal number of regions in both images.

_maxRegionCount - Maximal number of regions in both images.

_scoreMatrix - Score matrix for label matching.

_matchingMatrix - Label matching matrix (based on score matrix).

Throws:

de.unihalle.informatik.Alida.exceptions.ALDOperatorException - Thrown in case of failure.

Method Detail

doEvaluation

protected void doEvaluation()
                     throws de.unihalle.informatik.Alida.exceptions.ALDOperatorException,
                            de.unihalle.informatik.Alida.exceptions.ALDProcessingDAGException

Description copied from class: EvaluationMeasure

Method to overwrite that does actual calculations.

Specified by:

doEvaluation in class EvaluationMeasure

Throws:

de.unihalle.informatik.Alida.exceptions.ALDOperatorException - Thrown in case of failure.

de.unihalle.informatik.Alida.exceptions.ALDProcessingDAGException - Thrown in case of failure.